- Master Degree Program on Cyber-Security Intelligence
- National Cheng Kung University
- Academy of Innovative Semiconductor and Sustainable Manufacturing
- Advanced Optoelectronic Technology Center
- Center for General Education
- Center for Innovative Fintech Business Models
- Center for Micro/Nano Science and Technology
- Center of Applied Nanomedicine
- Center of Infectious Disease and Signaling Research
- College of Bioscience and Biotechnology
- College of Electrical Engineering and Computer Science
- Department of Computer Science and Information Engineering
- Department of Electrical Engineering
- Doctoral Degree Program on Nano-Integrated-Circuit Engineering
- Graduate Program of Artificial Intelligence
- Institute of Computer and Communication Engineering
- Institute of Manufacturing Information and Systems
- Institute of Medical Informatics
- Institute of Microelectronics
- Master Degree Program on Nano-Integrated-Circuit Engineering
- College of Engineering
- Department of Aeronautics and Astronautics
- Department of Biomedical Engineering
- Department of Chemical Engineering
- Department of Civil Engineering
- Department of Engineering Science
- Department of Environmental Engineering
- Department of Geomatics
- Department of Hydraulic and Ocean Engineering
- Department of Materials Science and Engineering
- Department of Mechanical Engineering
- Department of Resources Engineering
- Department of Systems and Naval Mechatronic Engineering
- Engineering Management Graduate Program
- Institute of Civil Aviation
- Institute of Ocean Technology and Marine Affairs
- International Bachelor Degree Program on Energy Engineering
- International Curriculum for Advanced Materials Program
- International Doctoral Degree Program on Energy Engineering
- International Master Degree Program on Energy Engineering
- International Master Program on Natural Hazards Mitigation and Management
- College of Liberal Arts
- College of Management
- Advanced Master of Business Administration (AMBA)
- Department of Accountancy
- Department of Business Administration
- Department of Industrial and Information Management
- Department of Statistics
- Department of Transportation and Communication Management Science
- Doctor of Business Administration (DBA)
- Executive Master of Business Administration (EMBA)
- Institute of Data Science
- Institute of Finance
- Institute of Information Management
- Institute of International Business
- Institute of International Management (IMBA)
- Institute of Physical Education, Health & Leisure Studies
- Institute of Telecommunications Management
- College of Medicine
- Department of Biochemistry and Molecular Biology
- Department of Cell Biology and Anatomy
- Department of Environmental and Occupational Health
- Department of Food Safety / Hygiene and Risk Management
- Department of Medical Laboratory Science and Biotechnology
- Department of Microbiology and Immunology
- Department of Nursing
- Department of Occupational Therapy
- Department of Pharmacology
- Department of Physical Therapy
- Department of Physiology
- Department of Public Health
- Institute of Allied Health Sciences
- Institute of Basic Medical Sciences
- Institute of Behavioral Medicine
- Institute of Clinical Medicine
- Institute of Clinical Pharmacy and Pharmaceutical Sciences
- Institute of Gerontology
- Institute of Molecular Medicine
- Institute of Oral Medicine
- Laboratory Animal Center
- School of Dentistry
- School of Medicine
- Department of Anesthesiology
- Department of Biochemistry and Molecular Biology
- Department of Cell Biology and Anatomy
- Department of Dermatology
- Department of Emergency Medicine
- Department of Environmental and Occupational Health
- Department of Family Medicine
- Department of Forensic Medicine
- Department of Geriatric Medicine
- Department of Humanities and Social Medicine
- Department of Internal Medicine
- Department of Medical Imaging
- Department of Microbiology and Immunology
- Department of Neurology
- Department of Nuclear Medicine
- Department of Obstetrics Gynecology
- Department of Occupational and Environmental Medicine
- Department of Oncology
- Department of Ophthalmology
- Department of Orthopaedics
- Department of Otolaryngology
- Department of Parasitology
- Department of Pathology
- Department of Pediatrics
- Department of Pharmacology
- Department of Physical Medicine and Rehabilitation
- Department of Physiology
- Department of Psychiatry
- Department of Public Health
- Department of Radiology
- Department of Surgery
- Department of Urology
- Institute of Oral Medicine
- School of Pharmacy
- College of Planning and Design
- College of Sciences
- College of Social Science
- Computer and Network Center
- Cross College Elite Program
- Engineering and Technology Promotion Center
- Executive Vice President
- Hierarchical Green-Energy Materials Research Center
- Innovation Headquarters
- Aerospace Science and Technology Research Center
- Agriculture Biotechnology Research Center
- Center for Advanced Plasma Science and Technology
- Center for Genomic Medicine
- Center for Research in Water Science and Technology
- Center for Research of E-life DIgital Technology
- Coastal Ocean Monitoring Center
- Computational simulation center
- Disaster Prevention Research Center
- E-Manufacturing Research Center
- Fire Protection and Safety Research Center
- Healthy City Research center
- Innovative Digital Content Research Center
- National Land Research Center
- Orchid Research and Development Center
- Research Center of Environmental Trace Toxic Substances
- Satellite Geo-Information Research Center
- Technology Transfer and Business Incubation Center
- Intelligent Manufacturing Research Center
- International Center for the Scientific Development of Shrimp Aquaculture
- International Center for Wound Repair and Regeneration
- International Master's Program in Interdisciplinary Sustainability Studies
- Medical Device Innovation Center
- Miin Wu School of Computing
- National Cheng Kung University Hospital
- Alzheimer's Disease Center
- Cancer Center
- Center for Infection Control
- Center of Interventional Medicine
- Clinical Medicine Research Center
- Clinical Trial Center
- Clinical Trial Center for Chinese Medicine
- Department of Anesthesiology(NCKUH)
- Department of Dentistry(NCKUH)
- Department of Dermatology(NCKUH)
- Department of Emergency Medicine(NCKUH)
- Department of Family Medicine(NCKUH)
- Department of Internal Medicine(NCKUH)
- Department of Medical Imaging(NCKUH)
- Department of Neurology(NCKUH)
- Department of Obstetrics and Gynecology(NCKUH)
- Department of Occupational and Environmental Medicine(NCKUH)
- Department of Ophthalmology(NCKUH)
- Department of Orthopedics(NCKUH)
- Department of Otolaryngology(NCKUH)
- Department of Outpatient Services(NCKUH)
- Department of Pathology(NCKUH)
- Department of Pediatrics(NCKUH)
- Department of Physical Medicine Rehabilitation(NCKUH)
- Department of Psychiatry(NCKUH)
- Department of Radiation Oncology(NCKUH)
- Department of Surgery(NCKUH)
- Department of Urology(NCKUH)
- Diabetes Prevention & Treatment Center
- Genetic Center
- Health Management Center
- Human Research Protection Center
- Innovation Center of Medical Device and Technology
- Physical Therapy Center
- Sleep Medicine Center
- South Regional Emergency Operations Center
- National Cheng Kung University Museum
- Office of Academic Affairs
- Office of International Affairs
- Office of Research and Development
- Office of Student Affairs
- Research Center for Energy Technology and Strategy
- Research Center for Humanities and Social Sciences
- Sustainable Environment Research Laboratories
- Tainan Hydraulics Laboratory
- University Center for Bioscience and Biotechnology