Research Output 1985 2020

Filter
Article
2020

Comparative treatment outcomes for patients with idiopathic subglottic stenosis

Gelbard, A., Anderson, C., Berry, L. D., Amin, M. R., Benninger, M. S., Blumin, J. H., Bock, J. M., Bryson, P. C., Castellanos, P. F., Chen, S. C., Clary, M. S., Cohen, S. M., Crawley, B. K., Dailey, S. H., Daniero, J. J., De Alarcon, A., Donovan, D. T., Edell, E. S., Ekbom, D. C., Fernandes-Taylor, S. & 55 others, Fink, D. S., Franco, R. A., Garrett, C. G., Guardiani, E. A., Hillel, A. T., Hoffman, H. T., Hogikyan, N. D., Howell, R. J., Huang, L. C., Hussain, L. K., Johns, M. M., Kasperbauer, J. L., Khosla, S. M., Kinnard, C., Kupfer, R. A., Langerman, A. J., Lentz, R. J., Lorenz, R. R., Lott, D. G., Lowery, A. S., Makani, S. S., Maldonado, F., Mannion, K., Matrka, L., McWhorter, A. J., Merati, A. L., Mori, M. C., Netterville, J. L., ODell, K., Ongkasuwan, J., Postma, G. N., Reder, L. S., Rohde, S. L., Richardson, B. E., Rickman, O. B., Rosen, C. A., Rutter, M. J., Sandhu, G. S., Schindler, J. S., Schneider, G. T., Shah, R. N., Sikora, A. G., Sinard, R. J., Smith, M. E., Smith, L. J., Soliman, A. M. S., Sveinsdóttir, S., Van Daele, D. J., Veivers, D., Verma, S. P., Weinberger, P. M., Weissbrod, P. A., Wootten, C. T., Shyr, Y. & Francis, D. O., 2020 Jan, In : JAMA Otolaryngology - Head and Neck Surgery. 146, 1, p. 20-29 10 p.

Research output: Contribution to journalArticle

Open Access
Pathologic Constriction
Dilatation
Rare Diseases
Recurrence
Therapeutics
1 Citation (Scopus)

Functional Status in Older Intensive Care Unit Survivors

Tang, H. J., Tang, H. Y., Chang, C. M., Su, P. F. & Chen, C. H., 2020 Jan 1, In : Clinical Nursing Research. 29, 1, p. 5-12 8 p.

Research output: Contribution to journalArticle

Geriatrics
Intensive Care Units
Survivors
APACHE
Delirium

Kidney Stone History and Adverse Outcomes After Percutaneous Coronary Intervention

Lai, C. H., Huang, L. C., Holby, S. N., Lai, Y. J., Su, P. F., Cheng, Y. S., Shyr, Y. & Hsi, R. S., 2020 Feb, In : Urology. 136, p. 75-81 7 p.

Research output: Contribution to journalArticle

Kidney Calculi
Percutaneous Coronary Intervention
Hospital Mortality
Odds Ratio
Myocardial Infarction

Quality of life and pregnancy outcomes among women undergoing in vitro fertilization treatment: A longitudinal cohort study

Wu, M. H., Su, P. F., Chu, W. Y., Huey, N. G., Lin, C. W., Ou, H. T. & Lin, C. Y., 2020 Jan, In : Journal of the Formosan Medical Association. 119, 1P3, p. 471-479 9 p.

Research output: Contribution to journalArticle

Open Access
Fertilization in Vitro
Pregnancy Outcome
Longitudinal Studies
Cohort Studies
Quality of Life

Robust kernel association testing (RobKAT)

Martinez, K., Maity, A., Yolken, R. H., Sullivan, P. F. & Tzeng, J. Y., 2020 Jan 1, (Accepted/In press) In : Genetic Epidemiology.

Research output: Contribution to journalArticle

Major Histocompatibility Complex
Least-Squares Analysis
Single Nucleotide Polymorphism
Clinical Trials
Herpesviridae
2019
7 Citations (Scopus)

Aberrant FGFR signaling mediates resistance to CDK4/6 inhibitors in ER+ breast cancer

Formisano, L., Lu, Y., Servetto, A., Hanker, A. B., Jansen, V. M., Bauer, J. A., Sudhan, D. R., Guerrero-Zotano, A. L., Croessmann, S., Guo, Y., Ericsson, P. G., Lee, K. M., Nixon, M. J., Schwarz, L. J., Sanders, M. E., Dugger, T. C., Cruz, M. R., Behdad, A., Cristofanilli, M., Bardia, A. & 11 others, O’Shaughnessy, J., Nagy, R. J., Lanman, R. B., Solovieff, N., He, W., Miller, M., Su, F., Shyr, Y., Mayer, I. A., Balko, J. M. & Arteaga, C. L., 2019 Dec 1, In : Nature communications. 10, 1, 1373.

Research output: Contribution to journalArticle

Open Access
breast
inhibitors
cancer
Breast Neoplasms
Protein-Tyrosine Kinases

Active learning with simultaneous subject and variable selections

Ivan Chang, Y. C. & Chen, R-B., 2019 Feb 15, In : Neurocomputing. 329, p. 495-505 11 p.

Research output: Contribution to journalArticle

Problem-Based Learning
Patient Selection
Labels
Learning
Sample Size

Adaptive treatment allocation for comparative clinical studies with recurrent events data

Gao, J., Su, P. F., Hu, F. & Cheung, S. H., 2019 Jan 1, (Accepted/In press) In : Biometrics.

Research output: Contribution to journalArticle

Recurrent Events
clinical trials
data analysis
Therapeutics
Biased Coin Design
1 Citation (Scopus)

A modified developmental care bundle reduces pain and stress in preterm infants undergoing examinations for retinopathy of prematurity: A randomised controlled trial

Chuang, L. J., Wang, S. H., Ma, M-C., Lin, C. N., Chen, C. L. & Huang, M-C., 2019 Feb 1, In : Journal of Clinical Nursing. 28, 3-4, p. 545-559 15 p.

Research output: Contribution to journalArticle

Patient Care Bundles
Retinopathy of Prematurity
Premature Infants
Randomized Controlled Trials
Pain
1 Citation (Scopus)

An active learning-based approach for location-aware acquaintance inference

Chen, B. H., Li, C-T., Chuang, K-T., Pang, J. & Zhang, Y., 2019 Jun 4, In : Knowledge and Information Systems. 59, 3, p. 539-569 31 p.

Research output: Contribution to journalArticle

Labeling
Recommender systems
Mobile devices
Feedback
Sensors

Analysis of a customized cervical collar to improve neck posture during smartphone usage: a comparative study in healthy subjects

Kuo, Y. R., Fang, J-J., Wu, C. T., Lin, R. M., Su, P-F. & Lin, C-L., 2019 Aug 1, In : European Spine Journal. 28, 8, p. 1793-1803 11 p.

Research output: Contribution to journalArticle

Posture
Healthy Volunteers
Neck
Head
Sports

A new demerit control chart for monitoring the quality of multivariate Poisson processes

Li, C. I., Pan, J. N. & Huang, M. H., 2019, In : Journal of Applied Statistics. 46, 4, p. 1-20

Research output: Contribution to journalArticle

Assessing the Similarity between Random Copolymer Drug Glatiramer Acetate by Using LC-MS Data Coupling with Hypothesis Testing

Wu, H. Y., Ma, M. C., Pan, Y. Y., Shih, C. L., Zgoda, V., Li, C. S., Lin, L. C. & Liao, P. C., 2019 Nov 19, In : Analytical chemistry. 91, 22, p. 14281-14289 9 p.

Research output: Contribution to journalArticle

Liquid chromatography
Mass spectrometry
Copolymers
Testing
Pharmaceutical Preparations

Bayesian structure selection for vector autoregression model

Chu, C. H., Lo Huang, M. N., Huang, S. F. & Chen, R-B., 2019 Aug 1, In : Journal of Forecasting. 38, 5, p. 422-439 18 p.

Research output: Contribution to journalArticle

Vector Autoregression
Dimensionality
Coefficient
Multiple Time Series
Model structures
Bayesian Design
Two-stage Design
Hypothesis Test
Screening
Drugs

Bayesian variable selection in a finite mixture of linear mixed-effects models

Lee, K-J. & Chen, R-B., 2019 Sep 2, In : Journal of Statistical Computation and Simulation. 89, 13, p. 2434-2453 20 p.

Research output: Contribution to journalArticle

Bayesian Variable Selection
Linear Mixed Effects Model
Finite Mixture
Monte Carlo Sampling
Social sciences
3 Citations (Scopus)

beRBP: binding estimation for human RNA-binding proteins

Yu, H., Wang, J., Sheng, Q., Liu, Q. & Shyr, Y., 2019 Mar 18, In : Nucleic acids research. 47, 5, p. e26

Research output: Contribution to journalArticle

Open Access
RNA-Binding Proteins
RNA
Benchmarking
Protein Binding

Critical fault-detecting time evaluation in software with discrete compound Poisson models

Hsieh, M. H., Jeng, S-L. & Kvam, P., 2019 Jan 1, In : Journal of Quality Technology. 51, 1, p. 94-108 15 p.

Research output: Contribution to journalArticle

Managers
Software
Evaluation
Compound Poisson model
Fault

Detecting the process changes for multivariate nonlinear profile data

Pan, J-N., Li, C-I. & Lu, M. Z., 2019 Oct 1, In : Quality and Reliability Engineering International. 35, 6, p. 1890-1910 21 p.

Research output: Contribution to journalArticle

Monitoring
Normal distribution
Control charts
Process change
Moving average
1 Citation (Scopus)

Efficient Signal Inclusion With Genomic Applications

Jeng, X. J., Zhang, T. & Tzeng, J. Y., 2019 Oct 2, In : Journal of the American Statistical Association. 114, 528, p. 1787-1799 13 p.

Research output: Contribution to journalArticle

Genomics
Proportion
Single nucleotide Polymorphism
Inclusion
Adaptive Procedure

Establishing and Evaluating an ASCO Learning Cohort: a Longitudinal Project Assessing the Learning Needs and Behaviors of Oncology Professionals

Manochakian, R., George, T. J., Wood, M., Polansky, M., Baer, A., Grupe, A., Shyr, Y., Wang, C. & Horn, L., 2019 Jan 1, (Accepted/In press) In : Journal of Cancer Education.

Research output: Contribution to journalArticle

Medical Oncology
Learning
Demography
Delivery of Health Care
Continuing Education

Extramedullary leukemia behaving as solid cancer: clinical, histologic, and genetic clues to chemoresistance in organ sites

Cunningham, I., Hamele-Bena, D., Guo, Y., Shiomi, T., Papp, A. C., Chakravarti, B., Yang, J., Shyr, Y. & Fisher, R. A., 2019 Nov 1, In : American Journal of Hematology. 94, 11, p. 1200-1207 8 p.

Research output: Contribution to journalArticle

Leukemia
Neoplasms
Bone Marrow
Breast Neoplasms
Treatment Failure
1 Citation (Scopus)

Gender differences in inappropriate use of urinary catheters among hospitalized older patients

Hu, F. W., Chang, C-M., Su, P-F., Chen, H. Y. & Chen, C. H., 2019 Mar 4, In : Journal of Women and Aging. 31, 2, p. 165-175 11 p.

Research output: Contribution to journalArticle

Urinary Catheters
gender-specific factors
incidence
Catheters
demographic factors
1 Citation (Scopus)

HACER: An atlas of human active enhancers to interpret regulatory variants

Wang, J., Dai, X., Berry, L. D., Cogan, J. D., Liu, Q. & Shyr, Y., 2019 Jan 8, In : Nucleic acids research. 47, D1, p. D106-D112

Research output: Contribution to journalArticle

Open Access
Atlases
Transcription Factors
Gene Regulatory Networks
Nucleic Acid Regulatory Sequences
Genome-Wide Association Study
1 Citation (Scopus)

Health-related quality of life associated with different cancer treatments in Chinese breast cancer survivors in Taiwan

Ou, H. T., Chung, W. P., Su, P. F., Lin, T. H., Lin, J. Y., Wen, Y. C. & Fang, W. T., 2019 Jul, In : European Journal of Cancer Care. 28, 4, e13069.

Research output: Contribution to journalArticle

Taiwan
Survivors
Quality of Life
Breast Neoplasms
Neoplasms
3 Citations (Scopus)

Human PAH is characterized by a pattern of lipid-related insulin resistance

Hemnes, A. R., Luther, J. M., Rhodes, C. J., Burgess, J. P., Carlson, J., Fan, R., Fessel, J. P., Fortune, N., Gerszten, R. E., Halliday, S. J., Hekmat, R., Howard, L., Newman, J. H., Niswender, K. D., Pugh, M. E., Robbins, I. M., Sheng, Q., Shibao, C. A., Shyr, Y., Sumner, S. & 7 others, Talati, M., Wharton, J., Wilkins, M. R., Ye, F., Yu, C., West, J. & Brittain, E. L., 2019 Jan 10, In : JCI Insight. 4, 1

Research output: Contribution to journalArticle

Open Access
Pulmonary Hypertension
Insulin Resistance
Lipids
Oxidized LDL Receptors
Lipoproteins
3 Citations (Scopus)

Identification of targetable recurrent MAP3K8 rearrangements in melanomas lacking known driver mutations

Lehmann, B. D., Shaver, T. M., Johnson, D. B., Li, Z., Gonzalez-Ericsson, P. I., Sánchez, V., Shyr, Y., Sanders, M. E. & Pietenpol, J. A., 2019 Jan 1, In : Molecular Cancer Research. 17, 9, p. 1842-1853 12 p.

Research output: Contribution to journalArticle

Melanoma
Mutation
Mitogen-Activated Protein Kinase Kinases
Mitogen-Activated Protein Kinases
Atlases
1 Citation (Scopus)

Identifying individual risk rare variants using protein structure guided local tests (POINT)

West, R. M., Lu, W., Rotroff, D. M., Kuenemann, M. A., Chang, S. M., Wu, M. C., Wagner, M. J., Buse, J. B., Motsinger-Reif, A. A., Fourches, D. & Tzeng, J. Y., 2019 Feb 1, In : PLoS Computational Biology. 15, 2, e1006722.

Research output: Contribution to journalArticle

Open Access
Protein Structure
protein structure
Aggregation
Agglomeration
Kernel Machines
1 Citation (Scopus)
Tie
Social Networks
Feature Modeling
Mobile devices
Energy conservation

Linear profiles monitoring in the presence of nonnormal random errors

Li, C. I. & Tsai, T. R., 2019 Dec 1, In : Quality and Reliability Engineering International. 35, 8, p. 2579-2592 14 p.

Research output: Contribution to journalArticle

Random errors
Normal distribution
Monitoring
Quality control
Masks

Mentor-spotting: recommending expert mentors to mentees for live trouble-shooting in Codementor

Li, C-T., 2019 Nov 1, In : Knowledge and Information Systems. 61, 2, p. 799-820 22 p.

Research output: Contribution to journalArticle

Supervised learning
Innovation
Availability

Modeling financial interval time series

Lin, L. C. & Sun, L. H., 2019 Feb, In : PloS one. 14, 2, e0211709.

Research output: Contribution to journalArticle

Open Access
Time series
time series analysis
Likelihood Functions
Volatilization
financial economics
3 Citations (Scopus)

Molecular damage and responses of oral keratinocyte to hydrogen peroxide

Lin, K. Y., Chung, C. H., Ciou, J. S., Su, P. F., Wang, P. W., Shieh, D. B. & Wang, T. C., 2019 Jan 11, In : BMC Oral Health. 19, 1, 10.

Research output: Contribution to journalArticle

Keratinocytes
Hydrogen Peroxide
Dentin Sensitivity
Tooth Bleaching
Comet Assay
2 Citations (Scopus)

Monitoring nonlinear profile data using support vector regression method

Li, C-I., Pan, J-N. & Liao, C. H., 2019 Feb 1, In : Quality and Reliability Engineering International. 35, 1, p. 127-135 9 p.

Research output: Contribution to journalArticle

Monitoring
Normal distribution
Control charts
Regression method
Support vector regression

Optimal Noncollapsing Space-Filling Designs for Irregular Experimental Regions

Chen, R-B., Li, C. H., Hung, Y. & Wang, W., 2019 Jan 2, In : Journal of Computational and Graphical Statistics. 28, 1, p. 74-91 18 p.

Research output: Contribution to journalArticle

Discrete Optimization
Constrained Optimization Problem
Particle Swarm Optimization
Irregular
Thermal Management

Palliative Care Referrals for Advanced Non–small-cell Lung Cancer (NSCLC): Patient and Provider Attitudes and Practices

Feld, E., Singhi, E. K., Phillips, S., Huang, L. C., Shyr, Y. & Horn, L., 2019 May 1, In : Clinical Lung Cancer. 20, 3, p. e291-e298

Research output: Contribution to journalArticle

Palliative Care
Non-Small Cell Lung Carcinoma
Referral and Consultation

Predictors of caregiver burden and care costs for older persons with dementia in Taiwan

Ku, L-J. E., Chang, S-M., Pai, M-C. & Hsieh, H. M., 2019 Jun 1, In : International Psychogeriatrics. 31, 6, p. 885-894 10 p.

Research output: Contribution to journalArticle

Taiwan
Caregivers
Dementia
Costs and Cost Analysis
Interviews

Reference equations for spirometry in healthy Asian children aged 5 to 18 years in Taiwan

Chang, S. M., Tsai, H. J., Tzeng, J. Y., Yeh, K. W., Chen, L. C., Lai, S. H., Liao, S. L., Hua, M. C., Tsai, M. H., Huang, J. L. & Yao, T. C., 2019 Nov, In : World Allergy Organization Journal. 12, 11, 100074.

Research output: Contribution to journalArticle

Open Access
Spirometry
Taiwan
Lung
Linear Models
Reference Values

scRNABatchQC: multi-samples quality control for single cell RNA-seq data

Liu, Q., Sheng, Q., Ping, J., Ramirez, M. A., Lau, K. S., Coffey, R. J. & Shyr, Y., 2019 Dec 15, In : Bioinformatics (Oxford, England). 35, 24, p. 5306-5308 3 p.

Research output: Contribution to journalArticle

Open Access
Quality Control
RNA
Quality control
Cell
Bioinformatics

Semiparametric additive rates model for recurrent events data with intermittent gaps

Su, P-F., Zhong, J. & Ou, H-T., 2019 Apr 15, In : Statistics in Medicine. 38, 8, p. 1343-1356 14 p.

Research output: Contribution to journalArticle

Recurrent Events
National Health Programs
Biased Estimation
Taiwan
Hypoglycemia

Sparse-Group Independent Component Analysis with application to yield curves prediction

Chen, Y., Niu, L., Chen, R-B. & He, Q., 2019 May 1, In : Computational Statistics and Data Analysis. 133, p. 76-89 14 p.

Research output: Contribution to journalArticle

Independent component analysis
Independent Component Analysis
Curve
Prediction
Estimator
4 Citations (Scopus)

Systems Biology Analyses Show Hyperactivation of Transforming Growth Factor-β and JNK Signaling Pathways in Esophageal Cancer

Blum, A. E., Venkitachalam, S., Ravillah, D., Chelluboyina, A. K., Kieber-Emmons, A. M., Ravi, L., Kresak, A., Chandar, A. K., Markowitz, S. D., Canto, M. I., Wang, J. S., Shaheen, N. J., Guo, Y., Shyr, Y., Willis, J. E., Chak, A., Varadan, V. & Guda, K., 2019 May 1, In : Gastroenterology. 156, 6, p. 1761-1774 14 p.

Research output: Contribution to journalArticle

Systems Biology
Transforming Growth Factors
Esophageal Neoplasms
Adenocarcinoma
Phosphotransferases

Temporal popularity prediction of locations for geographical placement of retail stores

Hsieh, H-P., Lin, F., Li, C-T., Yen, I. E. H. & Chen, H. Y., 2019 Jul 1, In : Knowledge and Information Systems. 60, 1, p. 247-273 27 p.

Research output: Contribution to journalArticle

Retail stores
Supervised learning
Profitability
Interpolation

Who should I invite: predicting event participants for a host user

Jiang, J. Y. & Li, C-T., 2019 Jun 4, In : Knowledge and Information Systems. 59, 3, p. 629-650 22 p.

Research output: Contribution to journalArticle

Factorization
Internet
Costs
Experiments
2018

A check-in shielding scheme against acquaintance inference in location-based social networks

Chen, B. H., Li, C-T. & Chuang, K-T., 2018 Jan 1, (Accepted/In press) In : World Wide Web.

Research output: Contribution to journalArticle

Shielding
Experiments
Partial Least Squares Regression
Recommender systems
Recommendations
Recommender Systems
Factorization
1 Citation (Scopus)

A Powerful Test for SNP Effects on Multivariate Binary Outcomes Using Kernel Machine Regression

Davenport, C. A., Maity, A., Sullivan, P. F. & Tzeng, J. Y., 2018 Apr 1, In : Statistics in Biosciences. 10, 1, p. 117-138 22 p.

Research output: Contribution to journalArticle

Kernel Machines
Binary Outcomes
Single Nucleotide Polymorphism
Regression
Polymorphism
8 Citations (Scopus)

Bioinformatic analysis of endogenous and exogenous small RNAs on lipoproteins

Allen, R. M., Zhao, S., Ramirez Solano, M. A., Zhu, W., Michell, D. L., Wang, Y., Shyr, Y., Sethupathy, P., Linton, M. F., Graf, G. A., Sheng, Q. & Vickers, K. C., 2018 Jan 1, In : Journal of Extracellular Vesicles. 7, 1, 1506198.

Research output: Contribution to journalArticle

Open Access
Computational Biology
Lipoproteins
Genome
RNA
MicroRNAs
5 Citations (Scopus)

Cadmium exposure increases the risk of juvenile obesity: a human and zebrafish comparative study

Green, A. J., Hoyo, C., Mattingly, C. J., Luo, Y., Tzeng, J. Y., Murphy, S. K., Buchwalter, D. B. & Planchart, A., 2018 Jul 1, In : International Journal of Obesity. 42, 7, p. 1285-1295 11 p.

Research output: Contribution to journalArticle

Zebrafish
Cadmium
Obesity
Heavy Metals
Epigenomics