Research Output 1991 2020

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2020

Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes

Iwase, M., Sakai, S., Seno, S., Yeh, Y. S., Kuo, T., Takahashi, H., Nomura, W., Jheng, H. F., Horton, P., Osato, N., Matsuda, H., Inoue, K., Kawada, T. & Goto, T., 2020 Feb 1, In : Bioscience, Biotechnology and Biochemistry. 84, 2, p. 305-313 9 p.

Research output: Contribution to journalArticle

Long Noncoding RNA
White Adipose Tissue
Tissue
Groin
Adipocytes
2019

Accelerated Segmented Diffusion-Weighted Prostate Imaging for Higher Resolution, Higher Geometric Fidelity, and Multi-b Perfusion Estimation

Aksit Ciris, P., Chiou, J. Y. G., Glazer, D. I., Chao, T. C., Tempany-Afdhal, C. M., Madore, B. & Maier, S. E., 2019 Apr 1, In : Investigative radiology. 54, 4, p. 238-246 9 p.

Research output: Contribution to journalArticle

Prostate
Perfusion
Echo-Planar Imaging
Diffusion Magnetic Resonance Imaging
Magnetic Resonance Imaging

C-3PO: Click-sequence-aware deeP neural network (DNN)-based Pop-uPs recOmmendation: I know you’ll click

Huang, T. T. H. D. & Kao, H. Y., 2019 Nov 1, In : Soft Computing. 23, 22, p. 11793-11799 7 p.

Research output: Contribution to journalArticle

Application programs
Recommendations
Neural Networks
Collaborative filtering
Recommender systems

Development of a human-computer collaborative sleep scoring system for polysomnography recordings

Liang, S. F., Shih, Y. H., Chen, P. Y. & Kuo, C. E., 2019 Jan 1, In : PloS one. 14, 7, e0218948.

Research output: Contribution to journalArticle

Open Access
human development
Polysomnography
Human Development
sleep
Sleep

Development of a rule-based automatic five-sleep-stage scoring method for rats

Wei, T. Y., Young, C. P., Liu, Y. T., Xu, J. H., Liang, S. F., Shaw, F. Z. & Kuo, C. E., 2019 Sep 4, In : Biomedical engineering online. 18, 1, 92.

Research output: Contribution to journalArticle

Open Access
Sleep Stages
Rats
Sleep
Research Design
Hyperalgesia

Estimating genome-wide off-target effects for pyrrole-imidazole polyamide binding by a pathway-based expression profiling approach

Lin, J., Krishnamurthy, S., Yoda, H., Shinozaki, Y., Watanabe, T., Koshikawa, N., Takatori, A., Horton, P. & Nagase, H., 2019 Apr, In : PloS one. 14, 4, e0215247.

Research output: Contribution to journalArticle

Open Access
pyrroles
Pyrroles
imidazoles
Nylons
Genes
1 Citation (Scopus)

Evolutionary-fuzzy-integral-based convolutional neural networks for facial image classification

Lin, C. J., Lin, C. H., Sun, C. C. & Wang, S. H., 2019 Sep, In : Electronics (Switzerland). 8, 9, 997.

Research output: Contribution to journalArticle

Open Access
Image classification
Neural networks
Network architecture
Particle swarm optimization (PSO)
Artificial intelligence
2 Citations (Scopus)

Multiple Convolutional Neural Networks fusion using improved fuzzy integral for facial emotion recognition

Lin, C. J., Lin, C. H., Wang, S-H. & Wu, C. H., 2019 Jul 1, In : Applied Sciences (Switzerland). 9, 13, 2593.

Research output: Contribution to journalArticle

Open Access
emotions
Fusion reactions
fusion
Neural networks
Particle swarm optimization (PSO)

Using convolutional neural networks for character verification on integrated circuit components of printed circuit boards

Lin, C. H., Wang, S. H. & Lin, C. J., 2019 Nov 1, In : Applied Intelligence. 49, 11, p. 4022-4032 11 p.

Research output: Contribution to journalArticle

Image classification
Printed circuit boards
Integrated circuits
Inspection
Neural networks
2018
6 Citations (Scopus)

A fully integrated 16-channel closed-loop neural-prosthetic CMOS SoC with wireless power and bidirectional data telemetry for real-time efficient human epileptic seizure control

Cheng, C. H., Tsai, P. Y., Yang, T. Y., Cheng, W. H., Yen, T. Y., Luo, Z., Qian, X. H., Chen, Z. X., Lin, T. H., Chen, W. H., Chen, W. M., Liang, S. F., Shaw, F. Z., Chang, C. S., Hsin, Y. L., Lee, C. Y., Ker, M. D. & Wu, C. Y., 2018 Nov, In : IEEE Journal of Solid-State Circuits. 53, 11, p. 3314-3326 13 p., 8463542.

Research output: Contribution to journalArticle

Telemetering
Prosthetics
Binary phase shift keying
Electric potential
Modulation
2 Citations (Scopus)

EAGLE: Explicit Alternative Genome Likelihood Evaluator

Kuo, T., Frith, M. C., Sese, J. & Horton, P., 2018 Apr 20, In : BMC Medical Genomics. 11, 28.

Research output: Contribution to journalArticle

Genome
Benchmarking
Uncertainty
Exome
Eagles
1 Citation (Scopus)

Interval type-2 neural fuzzy controller-based navigation of cooperative load-carrying mobile robots in unknown environments

Lin, C. H., Wang, S-H. & Lin, C. J., 2018 Dec 1, In : Sensors (Switzerland). 18, 12, 4181.

Research output: Contribution to journalArticle

navigation
robots
Mobile robots
controllers
Navigation

Sequence homology in eukaryotes (SHOE): Interactive visual tool for promoter analysis 06 Biological Sciences 0604 Genetics

Polouliakh, N., Horton, P., Shibanai, K., Takata, K., Ludwig, V., Ghosh, S. & Kitano, H., 2018 Sep 27, In : BMC genomics. 19, 1, 715.

Research output: Contribution to journalArticle

Biological Science Disciplines
Sequence Homology
Eukaryota
Transcription Factors
Gene Expression
Frequency bands
2017
1 Citation (Scopus)

De-aliasing for signal restoration in Propeller MR imaging

Chiu, S. C., Chang, H. C., Chu, M. L., Wu, M. L., Chung, H. W. & Lin, Y. R., 2017 Feb 1, In : Magnetic Resonance Imaging. 36, p. 12-15 4 p.

Research output: Contribution to journalArticle

Propellers
Computer Simulation
Artifacts
Restoration
Imaging Phantoms
15 Citations (Scopus)

Development and Evaluation of a Wearable Device for Sleep Quality Assessment

Kuo, C. E., Liu, Y. C., Chang, D. W., Young, C. P., Shaw, F. Z. & Liang, S. F., 2017 Jul, In : IEEE Transactions on Biomedical Engineering. 64, 7, p. 1547-1557 11 p., 7575654.

Research output: Contribution to journalArticle

Sleep
Data reduction
Screening
Sampling
Testing
20 Citations (Scopus)

Extensive cargo identification reveals distinct biological roles of the 12 importin pathways

Kimura, M., Morinaka, Y., Imai, K., Kose, S., Horton, P. & Imamoto, N., 2017 Jan 24, In : eLife. 6, e21184.

Research output: Contribution to journalArticle

Karyopherins
Proteins
Isotope Labeling
Biological Phenomena
Cell Nucleus Active Transport
5 Citations (Scopus)

Fast diffusion imaging with high angular resolution

Chao, T. C., Chiou, J. Y. G., Maier, S. E. & Madore, B., 2017 Feb 1, In : Magnetic Resonance in Medicine. 77, 2, p. 696-706 11 p.

Research output: Contribution to journalArticle

Echo-Planar Imaging
Brain
Clinical Protocols
Volunteers
Research
1 Citation (Scopus)

Free-breathing black-blood CINE fast-spin echo imaging for measuring abdominal aortic wall distensibility: A feasibility study

Lin, J. M., Patterson, A. J., Chao, T. C., Zhu, C., Chang, H. C., Mendes, J., Chung, H. W., Gillard, J. H. & Graves, M. J., 2017 Apr 13, In : Physics in Medicine and Biology. 62, 10, p. N204-N218

Research output: Contribution to journalArticle

Feasibility Studies
Abdominal Wall
Respiration
Magnetic Resonance Imaging
Abdominal Aorta
7 Citations (Scopus)

High-precision bicycle detection on single side-view image based on the geometric relationship

Lin, Y. B. & Young, C. P., 2017 Mar 1, In : Pattern Recognition. 63, p. 334-354 21 p.

Research output: Contribution to journalArticle

Bicycles
Wheels
Detectors
7 Citations (Scopus)

Portable wireless neurofeedback system of EEG alpha rhythm enhances memory

Wei, T. Y., Chang, D. W., Liu, Y. D., Liu, C. W., Young, C. P., Liang, S. F. & Shaw, F. Z., 2017 Nov 13, In : Biomedical engineering online. 16, 1, 128.

Research output: Contribution to journalArticle

Neurofeedback
Alpha Rhythm
Bioelectric potentials
Electroencephalography
Data storage equipment
1 Citation (Scopus)
pulleys
Pulleys
hypodermis
flexors
Ultrasonics
2016
12 Citations (Scopus)

Combination of expert knowledge and a genetic fuzzy inference system for automatic sleep staging

Liang, S. F., Kuo, C. E., Shaw, F. Z., Chen, Y. H., Hsu, C. H. & Chen, J. Y., 2016 Oct, In : IEEE Transactions on Biomedical Engineering. 63, 10, 7360911.

Research output: Contribution to journalArticle

Fuzzy inference
Fuzzy rules
Fuzzy systems
Fuzzy sets
Electroencephalography

Cross-Sectional Nakagami Images in Passive Stretches Reveal Damage of Injured Muscles

Lin, S. P., Lin, Y. H., Fan, S. C., Huang, B. M., Lin, W. Y., Wang, S. H., Shung, K. K., Su, F. C. & Wu, C. C., 2016 Jan 1, In : BioMed research international. 2016, 6893712.

Research output: Contribution to journalArticle

Muscle
Muscles
Muscle Stretching Exercises
Ultrasonics
Ultrasonography
11 Citations (Scopus)

Dual-pathway multi-echo sequence for simultaneous frequency and T2 mapping

Cheng, C. C., Mei, C. S., Duryea, J., Chung, H. W., Chao, T. C., Panych, L. P. & Madore, B., 2016 Apr 1, In : Journal of Magnetic Resonance. 265, p. 177-187 11 p.

Research output: Contribution to journalArticle

Thermometry
Volunteers
Knee
echoes
Linear Models
3 Citations (Scopus)

Identification of binding targets of a pyrrole-imidazole polyamide KR12 in the LS180 colorectal cancer genome

Lin, J., Hiraoka, K., Watanabe, T., Kuo, T., Shinozaki, Y., Takatori, A., Koshikawa, N., Chandran, A., Otsuki, J., Sugiyama, H., Horton, P. & Nagase, H., 2016 Oct, In : PloS one. 11, 10, e0165581.

Research output: Contribution to journalArticle

pyrroles
Pyrroles
imidazoles
Nylons
colorectal neoplasms
4 Citations (Scopus)

Identification of the Position and Thickness of the First Annular Pulley in Sonographic Images

Yang, T-H., Lin, Y. H., Chuang, B. I., Chen, H. C., Lin, W. J., Yang, D. S., Wang, S-H., Sun, Y-N., Jou, I. M., Kuo, L-C. & Su, F., 2016 May 1, In : Ultrasound in Medicine and Biology. 42, 5, p. 1075-1083 9 p.

Research output: Contribution to journalArticle

pulleys
Ultrasonography
scanners
Research
Synovial Fluid
15 Citations (Scopus)

Rapid amygdala kindling causes motor seizure and comorbidity of anxiety- and depression-like behaviors in rats

Chen, S. D., Wang, Y. L., Liang, S. F. & Shaw, F. Z., 2016 Jun 22, In : Frontiers in Behavioral Neuroscience. 10, Jun, 129.

Research output: Contribution to journalArticle

Amygdala
Comorbidity
Seizures
Anxiety
Depression
5 Citations (Scopus)

Role of Excessive Autophagy Induced by Mechanical Overload in Vein Graft Neointima Formation: Prediction and Prevention

Chang, Y. J., Huang, H. C., Hsueh, Y. Y., Wang, S. W., Su, F. C., Chang, C. H., Tang, M. J., Li, Y. S., Wang, S. H., Shung, K. K., Chien, S. & Wu, C. C., 2016 Feb 26, In : Scientific reports. 6, 22147.

Research output: Contribution to journalArticle

Neointima
Autophagy
Veins
Transplants
Ultrasonics
2015
9 Citations (Scopus)

A novel mitosomal β-barrel outer membrane protein in Entamoeba

Santos, H. J., Imai, K., Makiuchi, T., Tomii, K., Horton, P., Nozawa, A., Ibrahim, M., Tozawa, Y. & Nozaki, T., 2015, In : Scientific reports. 5, 8545.

Research output: Contribution to journalArticle

Entamoeba
Membrane Proteins
Endopeptidase K
Entamoeba histolytica
Membranes
4 Citations (Scopus)

Curatable Named-Entity Recognition Using Semantic Relations

Hsu, Y. Y. & Kao, H-Y., 2015 Jul 1, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 12, 4, p. 785-792 8 p., 6945344.

Research output: Contribution to journalArticle

Named Entity Recognition
Semantics
Toxicogenetics
Genes
Databases
1 Citation (Scopus)

Effect of low-intensity ultrasound on mortality of PC12 induced by amyloid β25-35

Chiu, C. Y. & Wang, S-H., 2015 Jan 1, In : Journal of Medical and Biological Engineering. 35, 3, p. 323-330 8 p.

Research output: Contribution to journalArticle

PC12 Cells
Amyloid
Ultrasonics
Mortality
Cell death
1 Citation (Scopus)

Efficient imaging of midbrain nuclei using inverse double-echo steady-state acquisition

Wu, M. L., Chang, H. C., Chao, T. C. & Chen, N. K., 2015 Jul 1, In : Medical Physics. 42, 7, p. 4367-4374 8 p.

Research output: Contribution to journalArticle

Mesencephalon
Signal-To-Noise Ratio
Noise
Red Nucleus
Occipital Lobe

GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 2015 Jan 1, In : BMC genomics. 16, p. I1

Research output: Contribution to journalArticle

Computational Biology
History
Joints
Research
Posters

GIW and InCoB are advancing bioinformatics in the Asia-Pacific

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 2015 Dec 18, In : BMC Bioinformatics. 16, 18, I1.

Research output: Contribution to journalArticle

Informatics
Bioinformatics
Computational Biology
Genome
Genes
117 Citations (Scopus)

MitoFates: Improved prediction of mitochondrial targeting sequences and their cleavage sites

Fukasawa, Y., Tsuji, J., Fu, S. C., Tomii, K., Horton, P. & Imai, K., 2015 Apr 1, In : Molecular and Cellular Proteomics. 14, 4, p. 1113-1126 14 p.

Research output: Contribution to journalArticle

Mitochondria
Mitochondrial Proteins
Genes
Protein Isoforms
Position-Specific Scoring Matrices
70 Citations (Scopus)

Molecular architecture of the active mitochondrial protein gate

Shiota, T., Imai, K., Qiu, J., Hewitt, V. L., Tan, K., Shen, H. H., Sakiyama, N., Fukasawa, Y., Hayat, S., Kamiya, M., Elofsson, A., Tomii, K., Horton, P., Wiedemann, N., Pfanner, N., Lithgow, T. & Endo, T., 2015 Sep 25, In : Science. 349, 6255, p. 1544-1548 5 p.

Research output: Contribution to journalArticle

Mitochondrial Proteins
Cytosol
Mitochondria
Protein Isoforms
Proteins
26 Citations (Scopus)

Quantitative susceptibility mapping of human brain at 3T: A multisite reproducibility study

Lin, P. Y., Chao, T. C. & Wu, M. L., 2015 Mar 1, In : American Journal of Neuroradiology. 36, 3, p. 467-474 8 p.

Research output: Contribution to journalArticle

Brain Mapping
Brain
Red Nucleus
Globus Pallidus
Caudate Nucleus
8 Citations (Scopus)

Using off-the-shelf lossy compression for wireless home sleep staging

Lan, K. C., Chang, D. W., Kuo, C. E., Wei, M. Z., Li, Y. H., Shaw, F. Z. & Liang, S. F., 2015 May 5, In : Journal of Neuroscience Methods. 246, p. 142-152 11 p.

Research output: Contribution to journalArticle

Polysomnography
Sleep
Sleep Stages
Internet
Healthy Volunteers
2014
16 Citations (Scopus)

A bioinformatician's guide to the forefront of suffix array construction algorithms

Shrestha, A. M. S., Frith, M. C. & Horton, P., 2014 Mar, In : Briefings in bioinformatics. 15, 2, p. 138-154 17 p., bbt081.

Research output: Contribution to journalArticle

Seed
Bioinformatics
Data structures
Seeds
Computational Biology
3 Citations (Scopus)

Accelerated multi-shot diffusion imaging

Madore, B., Chiou, J. Y. G., Chu, R., Chao, T. C. & Maier, S. E., 2014 Aug, In : Magnetic Resonance in Medicine. 72, 2, p. 324-336 13 p.

Research output: Contribution to journalArticle

Fourier Analysis
Artifacts
Volunteers
Direction compound
2 Citations (Scopus)

Assessment of the kinetic trajectory of the median nerve in the wrist by high-frequency ultrasound

Lin, Y. H., Hsieh, M. Y., Su, F. C. & Wang, S. H., 2014 Apr 28, In : Sensors (Switzerland). 14, 5, p. 7738-7752 15 p.

Research output: Contribution to journalArticle

wrist
Median Nerve
nerves
Wrist
Tunnels

Bipartite editing prediction in wikipedia

Chang, Y. J., Tsai, Y. C. & Kao, H-Y., 2014, In : Journal of Information Science and Engineering. 30, 3, p. 587-603 17 p.

Research output: Contribution to journalArticle

Wikipedia
community
social network
Supervised learning
internet community
2 Citations (Scopus)

Effects of RF profile on precision of quantitative T2 mapping using dual-echo steady-state acquisition

Wu, P. H., Cheng, C. C., Wu, M. L., Chao, T. C., Chung, H. W. & Huang, T. Y., 2014 Jan 1, In : Magnetic Resonance Imaging. 32, 1, p. 102-106 5 p.

Research output: Contribution to journalArticle

Imaging techniques
Experiments
1 Citation (Scopus)

Genealogical-based method for multiple ontology self-extension in MeSH

Guo, Y. W., Tang, Y. T. & Kao, H. Y., 2014 Jun, In : IEEE Transactions on Nanobioscience. 13, 2, p. 124-130 7 p., 6823764.

Research output: Contribution to journalArticle

Ontology
Biological Ontologies
Biological Science Disciplines
Explosions
PubMed
1 Citation (Scopus)

Gene name disambiguation usingmulti-scope species detection

Hsiao, J. C., Wei, C. H. & Kao, H-Y., 2014 Jan 1, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 11, 1, p. 55-62 8 p., 6654152.

Research output: Contribution to journalArticle

Names
Genes
Gene
Data Mining
Cues
6 Citations (Scopus)
Osteoblasts
Ultrasonics
Phosphatases
Bone
Cells
14 Citations (Scopus)

IT2FS-based ontology with soft-computing mechanism for malware behavior analysis

Huang, H. D., Lee, C. S., Wang, M. H. & Kao, H-Y., 2014 Jan 1, In : Soft Computing. 18, 2, p. 267-284 18 p.

Research output: Contribution to journalArticle

Soft computing
Malware
Soft Computing
Ontology
Taiwan
9 Citations (Scopus)

Monitoring tissue inflammation and responses to drug treatments in early stages of mice bone fracture using 50 MHz ultrasound

Chen, Y. C., Lin, Y. H., Wang, S. H., Lin, S. P., Shung, K. K. & Wu, C. C., 2014 Jan 1, In : Ultrasonics. 54, 1, p. 177-186 10 p.

Research output: Contribution to journalArticle

bones
mice
drugs
death
staining
7 Citations (Scopus)

Musicians and non-musicians' different reliance of features in consonance perception: A behavioral and ERP study

Kung, C. C., Hsieh, T. H., Liou, J. Y., Lin, K. J., Shaw, F. Z. & Liang, S. F., 2014 May, In : Clinical Neurophysiology. 125, 5, p. 971-978 8 p.

Research output: Contribution to journalArticle

Evoked Potentials
Psychoacoustics
Music
Electrodes
Brain