Brice Horton Ii Paul

Professor

  • 5430 Citations
  • 20 h-Index
1992 …2020

Research output per year

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Research Output

2020

Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes

Iwase, M., Sakai, S., Seno, S., Yeh, Y. S., Kuo, T., Takahashi, H., Nomura, W., Jheng, H. F., Horton, P., Osato, N., Matsuda, H., Inoue, K., Kawada, T. & Goto, T., 2020 Feb 1, In : Bioscience, Biotechnology and Biochemistry. 84, 2, p. 305-313 9 p.

Research output: Contribution to journalArticle

2019

Estimating genome-wide off-target effects for pyrrole-imidazole polyamide binding by a pathway-based expression profiling approach

Lin, J., Krishnamurthy, S., Yoda, H., Shinozaki, Y., Watanabe, T., Koshikawa, N., Takatori, A., Horton, P. & Nagase, H., 2019 Apr, In : PloS one. 14, 4, e0215247.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Novel lineage-specific transmembrane β-barrel proteins in the endoplasmic reticulum of Entamoeba histolytica

Santos, H. J., Imai, K., Makiuchi, T., Tomii, K., Horton, P., Nozawa, A., Okada, K., Tozawa, Y. & Nozaki, T., 2019 Sep 1, In : FEBS Journal. 286, 17, p. 3416-3432 17 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2018

A bioinformatics potpourri

Schönbach, C., Li, J., Ma, L., Horton, P., Sjaugi, M. F. & Ranganathan, S., 2018 Jan 19, In : BMC genomics. 19, 920.

Research output: Contribution to journalEditorial

EAGLE: Explicit Alternative Genome Likelihood Evaluator

Kuo, T., Frith, M. C., Sese, J. & Horton, P., 2018 Apr 20, In : BMC Medical Genomics. 11, 28.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Sequence homology in eukaryotes (SHOE): Interactive visual tool for promoter analysis 06 Biological Sciences 0604 Genetics

Polouliakh, N., Horton, P., Shibanai, K., Takata, K., Ludwig, V., Ghosh, S. & Kitano, H., 2018 Sep 27, In : BMC genomics. 19, 1, 715.

Research output: Contribution to journalArticle

2017

Extensive cargo identification reveals distinct biological roles of the 12 importin pathways

Kimura, M., Morinaka, Y., Imai, K., Kose, S., Horton, P. & Imamoto, N., 2017 Jan 24, In : eLife. 6, e21184.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Ten simple rules for forming a scientific professional society

Gaëta, B. A., De Las Rivas, J., Horton, P., Meysman, P., Mulder, N., Romano, P. & Welch, L., 2017 Mar, In : PLoS Computational Biology. 13, 3, e1005226.

Research output: Contribution to journalEditorial

2 Citations (Scopus)
2016

A commentary on evaluation of the evenness score in next-generation sequencing

Horton, P., 2016 Jul 1, In : Journal of Human Genetics. 61, 7, 1 p.

Research output: Contribution to journalComment/debate

Identification of binding targets of a pyrrole-imidazole polyamide KR12 in the LS180 colorectal cancer genome

Lin, J., Hiraoka, K., Watanabe, T., Kuo, T., Shinozaki, Y., Takatori, A., Koshikawa, N., Chandran, A., Otsuki, J., Sugiyama, H., Horton, P. & Nagase, H., 2016 Oct, In : PloS one. 11, 10, e0165581.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2015

A novel mitosomal β-barrel outer membrane protein in Entamoeba

Santos, H. J., Imai, K., Makiuchi, T., Tomii, K., Horton, P., Nozawa, A., Ibrahim, M., Tozawa, Y. & Nozaki, T., 2015, In : Scientific reports. 5, 8545.

Research output: Contribution to journalArticle

9 Citations (Scopus)

GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 2015 Jan 1, In : BMC genomics. 16, p. I1

Research output: Contribution to journalArticle

GIW and InCoB are advancing bioinformatics in the Asia-Pacific

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 2015 Dec 18, In : BMC Bioinformatics. 16, 18, I1.

Research output: Contribution to journalArticle

Guest Editorial for the 25th International Conference on Genome Informatics (GIW/ISCB-Asia 2014)

Shibuya, T., Tang, C. Y., Horton, P. & Asai, K., 2015 Jul 1, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 12, 4, p. 761-762 2 p., 7180484.

Research output: Contribution to journalEditorial

Introduction to selected papers from GIW/InCoB 2015

Paul, B. H. I., Schönbach, C., Ranganathan, S. & Yiu, S. M., 2015 Oct 1, In : Journal of Bioinformatics and Computational Biology. 13, 5, 1502003.

Research output: Contribution to journalEditorial

MitoFates: Improved prediction of mitochondrial targeting sequences and their cleavage sites

Fukasawa, Y., Tsuji, J., Fu, S. C., Tomii, K., Horton, P. & Imai, K., 2015 Apr 1, In : Molecular and Cellular Proteomics. 14, 4, p. 1113-1126 14 p.

Research output: Contribution to journalArticle

133 Citations (Scopus)

Molecular architecture of the active mitochondrial protein gate

Shiota, T., Imai, K., Qiu, J., Hewitt, V. L., Tan, K., Shen, H. H., Sakiyama, N., Fukasawa, Y., Hayat, S., Kamiya, M., Elofsson, A., Tomii, K., Horton, P., Wiedemann, N., Pfanner, N., Lithgow, T. & Endo, T., 2015 Sep 25, In : Science. 349, 6255, p. 1544-1548 5 p.

Research output: Contribution to journalArticle

74 Citations (Scopus)
2014

A bioinformatician's guide to the forefront of suffix array construction algorithms

Shrestha, A. M. S., Frith, M. C. & Horton, P., 2014 Mar, In : Briefings in bioinformatics. 15, 2, p. 138-154 17 p., bbt081.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Editorial-The 25th international conference on genome informatics (GIW/ISCB-ASIA 2014)

Shibuya, T., Tang, C. Y., Horton, P. & Asai, K., 2014 Dec 29, In : Journal of Bioinformatics and Computational Biology. 12, 6, 1402002.

Research output: Contribution to journalEditorial

Next-generation bioinformatics: Connecting bases to genes, networks and disease

Horton, P., 2014 Mar, In : Briefings in bioinformatics. 15, 2, 1 p., bbt090.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Plus ça change - evolutionary sequence divergence predicts protein subcellular localization signals

Fukasawa, Y., Leung, R. K. K., Tsui, S. K. W. & Paul, B. H. I., 2014 Jan 20, In : BMC genomics. 15, 1, 46.

Research output: Contribution to journalArticle

8 Citations (Scopus)
2013

Finding Protein-Coding Genes through Human Polymorphisms

Wijaya, E., Frith, M. C., Horton, P. & Asai, K., 2013 Jan 29, In : PloS one. 8, 1, e54210.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Identification of cargo proteins specific for the nucleocytoplasmic transport carrier transportin by combination of an in vitro transport system and stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative proteomics

Kimura, M., Kose, S., Okumura, N., Imai, K., Furuta, M., Sakiyama, N., Tomii, K., Horton, P., Takao, T. & Imamoto, N., 2013 Jan 1, In : Molecular and Cellular Proteomics. 12, 1, p. 145-157 13 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Localization prediction and structure-based in silico analysis of bacterial proteins: With emphasis on outer membrane proteins

Imai, K., Hayat, S., Sakiyama, N., Fujita, N., Tomii, K., Elofsson, A. & Paul, B. H. I., 2013 Jan 8, Data Mining for Systems Biology: Methods and Protocols. Mamitsuka, H., Kanehisa, M. & DeLisi, C. (eds.). p. 115-140 26 p. (Methods in Molecular Biology; vol. 939).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Summary of talks and papers at ISCB-Asia/SCCG 2012

Tretyakov, K., Goldberg, T., Jin, V. X. & Horton, P., 2013 Apr 29, In : BMC genomics. 14, SUPPL. 2, I1.

Research output: Contribution to journalEditorial

ValidNESs: A database of validated leucine-rich nuclear export signals

Fu, S. C., Huang, H. C., Horton, P. & Juan, H. F., 2013 Jan 1, In : Nucleic acids research. 41, D1, p. D338-D343

Research output: Contribution to journalArticle

45 Citations (Scopus)
2012

Mammalian NUMT insertion is non-random

Tsuji, J., Frith, M. C., Tomii, K. & Horton, P., 2012 Oct 1, In : Nucleic acids research. 40, 18, p. 9073-9088 16 p.

Research output: Contribution to journalArticle

46 Citations (Scopus)

Paving the future: Finding suitable ismb venues

Rost, B., Gaasterland, T., Lengauer, T., Linial, M., Markel, S., Morrison Mckay, B. J., Schneider, R., Horton, P. & Kelso, J., 2012 Oct 1, In : Bioinformatics. 28, 19, p. 2556-2559 4 p., bts420.

Research output: Contribution to journalArticle

2 Citations (Scopus)

RecountDB: A database of mapped and count corrected transcribed sequences

Wijaya, E., Frith, M. C., Asai, K. & Horton, P., 2012 Jan 1, In : Nucleic acids research. 40, D1, p. D1089-D1092

Research output: Contribution to journalArticle

2011

Adaptive seeds tame genomic sequence comparison

Kiełbasa, S. M., Wan, R., Sato, K., Horton, P. & Frith, M. C., 2011 Mar 1, In : Genome Research. 21, 3, p. 487-493 7 p.

Research output: Contribution to journalArticle

434 Citations (Scopus)

Eukaryote-wide sequence analysis of mitochondrial β-barrel outer membrane proteins

Imai, K., Fujita, N., Gromiha, M. M. & Horton, P., 2011 Jan 28, In : BMC genomics. 12, 79.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Evolutionary sequence divergence predicts protein sub-cellular localization signals

Fukasawa, Y., Leung, R. K. K., Tsui, S. K. W. & Paul, B. H. I., 2011 Jan 1, 2011 IEEE International Conference on Systems Biology, ISB 2011. IEEE Computer Society, p. 307-312 6 p. (2011 IEEE International Conference on Systems Biology, ISB 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Prediction of leucine-rich nuclear export signal containing proteins with NESsential

Fu, S. C., Imai, K. & Horton, P., 2011 Sep 1, In : Nucleic acids research. 39, 16, p. e111

Research output: Contribution to journalArticle

42 Citations (Scopus)
2010

Improved prediction of transcription binding sites from chromatin modification data

Sato, K., Whitington, T., Bailey, T. L. & Horton, P., 2010 Aug 20, 2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010. p. 220-226 7 p. 5510323. (2010 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Incorporating sequence quality data into alignment improves DNA read mapping

Frith, M. C., Wan, R. & Horton, P., 2010 Jan 27, In : Nucleic acids research. 38, 7, p. e100 gkq010.

Research output: Contribution to journalArticle

48 Citations (Scopus)

In search of true reads: A classification approach to next generation sequencing data selection

Wijaya, E., Pessiot, J. F., Frith, M. C., Fujibuchi, W., Asai, K. & Paul, B. H. I., 2010 Dec 1, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010. p. 561-566 6 p. 5703862. (2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Parameters for accurate genome alignment

Frith, M. C., Hamada, M. & Paul, B. H. I., 2010 Feb 9, In : BMC Bioinformatics. 11, 80.

Research output: Contribution to journalArticle

114 Citations (Scopus)
2009

A tiling bound for pairwise global sequence alignment

Paul, B. H. I. & Frith, M., 2009 Dec 1, Advances in Software Engineering: International Conference, ASEA 2008, and Its Special Sessions, Sanya, Hainan Island, China, December 13-15, 2008. Revised Selected Papers. Kim, T., Fang, W. C., Lee, C. & Arnett, K. P. (eds.). p. 93-98 6 p. (Communications in Computer and Information Science; vol. 30).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Characterizing genes by marginal expression distribution

Wijaya, E., Harada, H. & Horton, P., 2009 Dec 1, Advances in Computational Science and Engineering: Second International Conference, FGCN 2008, Workshops and Symposia, Sanya, Hainan Island, China, December 13-15, 2008. Revised Selected Papers. Kim, T., Yang, L. T., Park, J. H., Chang, A. C-C., Vasilakos, T., Zhang, Y., Sauveron, D., Wang, X. & Jeong, Y-S. (eds.). p. 164-175 12 p. (Communications in Computer and Information Science; vol. 28).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Database development and discrimination algorithms for membrane protein functions

Gromiha, M. M., Yabuki, Y., Imai, K., Paul, B. H. I. & Fukui, K., 2009 Jan 1, In : World Academy of Science, Engineering and Technology. 37, p. 358-362 5 p.

Research output: Contribution to journalArticle

HAMSTER: Visualizing microarray experiments as a set of minimum spanning trees

Wan, R., Kiseleva, L., Harada, H., Mamitsuka, H. & Horton, P., 2009 Nov 20, In : Source Code for Biology and Medicine. 4, 8.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Recount: expectation maximization based error correction tool for next generation sequencing data.

Wijaya, E., Frith, M. C., Suzuki, Y. & Paul, B. H. I., 2009 Jan 1, In : Genome informatics. International Conference on Genome Informatics. 23, 1, p. 189-201 13 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)
2008

Erratum: CellMontage: Similar expression profile search server (Bioinformatics (2007) vol. 23 (22) (3103-3104))

Fujibuchi, W., Kiseleva, L., Taniguchi, T., Harada, H. & Horton, P., 2008 May 1, In : Bioinformatics. 24, 9, 1 p.

Research output: Contribution to journalComment/debate

Mitochondrial β-Barrel Proteins, an Exclusive Club?

Imai, K., Gromiha, M. M. & Horton, P., 2008 Dec 26, In : Cell. 135, 7, p. 1158-1159 2 p.

Research output: Contribution to journalLetter

11 Citations (Scopus)

Modeling the marginal distribution of gene expression with mixture models

Wijaya, E., Harada, H. & Paul, B. H. I., 2008 Dec 1, Proceedings of the 2008 2nd International Conference on Future Generation Communication and Networking, FGCN 2008 and BSBT 2008: 2008 International Conference on Bio-Science and Bio-Technology. p. 84-89 6 p. 4734285. (Proceedings of the 2008 2nd International Conference on Future Generation Communication and Networking, FGCN 2008 and BSBT 2008: 2008 International Conference on Bio-Science and Bio-Technology; vol. 3).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Genome Information Integration Project and H-Invitational 2 Consortium, 2008 Jan, In : Nucleic acids research. 36, SUPPL. 1, p. D793-D799

Research output: Contribution to journalArticle

55 Citations (Scopus)
2007

An upper bound on the hardness of exact matrix based motif discovery

Horton, P. & Fujibuchi, W., 2007 Dec, In : Journal of Discrete Algorithms. 5, 4 SPEC. ISS., p. 706-713 8 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

CellMontage: Similar expression profile search server

Fujibuchi, W., Kiseleva, L., Taniguchi, T., Harada, H. & Horton, P., 2007 Nov 1, In : Bioinformatics. 23, 22, p. 3103-3104 2 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Computational prediction of subcellular localization

Nakai, K. & Paul, B. H. I., 2007 May 21, Protein Targeting Protocols, Second Edition. p. 429-466 38 p. (Methods in Molecular Biology; vol. 390).

Research output: Chapter in Book/Report/Conference proceedingChapter

31 Citations (Scopus)

Exhaustive search of maximal biclusters in gene expression data

Okada, Y., Fujibuchi, W. & Horton, P., 2007 Dec 1, IMECS 2007 - International MultiConference of Engineers and Computer Scientists 2007. p. 307-312 6 p. (Lecture Notes in Engineering and Computer Science).

Research output: Chapter in Book/Report/Conference proceedingConference contribution