Brice Horton Ii Paul

Professor

  • 5390 Citations
  • 20 h-Index
1992 …2020

Research output per year

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Research Output

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Article
2020

Long non-coding RNA 2310069B03Rik functions as a suppressor of Ucp1 expression under prolonged cold exposure in murine beige adipocytes

Iwase, M., Sakai, S., Seno, S., Yeh, Y. S., Kuo, T., Takahashi, H., Nomura, W., Jheng, H. F., Horton, P., Osato, N., Matsuda, H., Inoue, K., Kawada, T. & Goto, T., 2020 Feb 1, In : Bioscience, Biotechnology and Biochemistry. 84, 2, p. 305-313 9 p.

Research output: Contribution to journalArticle

2019

Estimating genome-wide off-target effects for pyrrole-imidazole polyamide binding by a pathway-based expression profiling approach

Lin, J., Krishnamurthy, S., Yoda, H., Shinozaki, Y., Watanabe, T., Koshikawa, N., Takatori, A., Horton, P. & Nagase, H., 2019 Apr, In : PloS one. 14, 4, e0215247.

Research output: Contribution to journalArticle

Open Access

Novel lineage-specific transmembrane β-barrel proteins in the endoplasmic reticulum of Entamoeba histolytica

Santos, H. J., Imai, K., Makiuchi, T., Tomii, K., Horton, P., Nozawa, A., Okada, K., Tozawa, Y. & Nozaki, T., 2019 Sep 1, In : FEBS Journal. 286, 17, p. 3416-3432 17 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2018

EAGLE: Explicit Alternative Genome Likelihood Evaluator

Kuo, T., Frith, M. C., Sese, J. & Horton, P., 2018 Apr 20, In : BMC Medical Genomics. 11, 28.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Sequence homology in eukaryotes (SHOE): Interactive visual tool for promoter analysis 06 Biological Sciences 0604 Genetics

Polouliakh, N., Horton, P., Shibanai, K., Takata, K., Ludwig, V., Ghosh, S. & Kitano, H., 2018 Sep 27, In : BMC genomics. 19, 1, 715.

Research output: Contribution to journalArticle

2017

Extensive cargo identification reveals distinct biological roles of the 12 importin pathways

Kimura, M., Morinaka, Y., Imai, K., Kose, S., Horton, P. & Imamoto, N., 2017 Jan 24, In : eLife. 6, e21184.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2016

Identification of binding targets of a pyrrole-imidazole polyamide KR12 in the LS180 colorectal cancer genome

Lin, J., Hiraoka, K., Watanabe, T., Kuo, T., Shinozaki, Y., Takatori, A., Koshikawa, N., Chandran, A., Otsuki, J., Sugiyama, H., Horton, P. & Nagase, H., 2016 Oct, In : PloS one. 11, 10, e0165581.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2015

A novel mitosomal β-barrel outer membrane protein in Entamoeba

Santos, H. J., Imai, K., Makiuchi, T., Tomii, K., Horton, P., Nozawa, A., Ibrahim, M., Tozawa, Y. & Nozaki, T., 2015, In : Scientific reports. 5, 8545.

Research output: Contribution to journalArticle

9 Citations (Scopus)

GIW and InCoB, two premier bioinformatics conferences in Asia with a combined 40 years of history

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 2015 Jan 1, In : BMC genomics. 16, p. I1

Research output: Contribution to journalArticle

GIW and InCoB are advancing bioinformatics in the Asia-Pacific

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., 2015 Dec 18, In : BMC Bioinformatics. 16, 18, I1.

Research output: Contribution to journalArticle

MitoFates: Improved prediction of mitochondrial targeting sequences and their cleavage sites

Fukasawa, Y., Tsuji, J., Fu, S. C., Tomii, K., Horton, P. & Imai, K., 2015 Apr 1, In : Molecular and Cellular Proteomics. 14, 4, p. 1113-1126 14 p.

Research output: Contribution to journalArticle

127 Citations (Scopus)

Molecular architecture of the active mitochondrial protein gate

Shiota, T., Imai, K., Qiu, J., Hewitt, V. L., Tan, K., Shen, H. H., Sakiyama, N., Fukasawa, Y., Hayat, S., Kamiya, M., Elofsson, A., Tomii, K., Horton, P., Wiedemann, N., Pfanner, N., Lithgow, T. & Endo, T., 2015 Sep 25, In : Science. 349, 6255, p. 1544-1548 5 p.

Research output: Contribution to journalArticle

72 Citations (Scopus)
2014

A bioinformatician's guide to the forefront of suffix array construction algorithms

Shrestha, A. M. S., Frith, M. C. & Horton, P., 2014 Mar, In : Briefings in bioinformatics. 15, 2, p. 138-154 17 p., bbt081.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Plus ça change - evolutionary sequence divergence predicts protein subcellular localization signals

Fukasawa, Y., Leung, R. K. K., Tsui, S. K. W. & Paul, B. H. I., 2014 Jan 20, In : BMC genomics. 15, 1, 46.

Research output: Contribution to journalArticle

8 Citations (Scopus)
2013

Finding Protein-Coding Genes through Human Polymorphisms

Wijaya, E., Frith, M. C., Horton, P. & Asai, K., 2013 Jan 29, In : PloS one. 8, 1, e54210.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Identification of cargo proteins specific for the nucleocytoplasmic transport carrier transportin by combination of an in vitro transport system and stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative proteomics

Kimura, M., Kose, S., Okumura, N., Imai, K., Furuta, M., Sakiyama, N., Tomii, K., Horton, P., Takao, T. & Imamoto, N., 2013 Jan 1, In : Molecular and Cellular Proteomics. 12, 1, p. 145-157 13 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

ValidNESs: A database of validated leucine-rich nuclear export signals

Fu, S. C., Huang, H. C., Horton, P. & Juan, H. F., 2013 Jan 1, In : Nucleic acids research. 41, D1, p. D338-D343

Research output: Contribution to journalArticle

44 Citations (Scopus)
2012

Mammalian NUMT insertion is non-random

Tsuji, J., Frith, M. C., Tomii, K. & Horton, P., 2012 Oct 1, In : Nucleic acids research. 40, 18, p. 9073-9088 16 p.

Research output: Contribution to journalArticle

46 Citations (Scopus)

Paving the future: Finding suitable ismb venues

Rost, B., Gaasterland, T., Lengauer, T., Linial, M., Markel, S., Morrison Mckay, B. J., Schneider, R., Horton, P. & Kelso, J., 2012 Oct 1, In : Bioinformatics. 28, 19, p. 2556-2559 4 p., bts420.

Research output: Contribution to journalArticle

2 Citations (Scopus)

RecountDB: A database of mapped and count corrected transcribed sequences

Wijaya, E., Frith, M. C., Asai, K. & Horton, P., 2012 Jan 1, In : Nucleic acids research. 40, D1, p. D1089-D1092

Research output: Contribution to journalArticle

2011

Adaptive seeds tame genomic sequence comparison

Kiełbasa, S. M., Wan, R., Sato, K., Horton, P. & Frith, M. C., 2011 Mar 1, In : Genome Research. 21, 3, p. 487-493 7 p.

Research output: Contribution to journalArticle

426 Citations (Scopus)

Eukaryote-wide sequence analysis of mitochondrial β-barrel outer membrane proteins

Imai, K., Fujita, N., Gromiha, M. M. & Horton, P., 2011 Jan 28, In : BMC genomics. 12, 79.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Prediction of leucine-rich nuclear export signal containing proteins with NESsential

Fu, S. C., Imai, K. & Horton, P., 2011 Sep 1, In : Nucleic acids research. 39, 16, p. e111

Research output: Contribution to journalArticle

42 Citations (Scopus)
2010

Incorporating sequence quality data into alignment improves DNA read mapping

Frith, M. C., Wan, R. & Horton, P., 2010 Jan 27, In : Nucleic acids research. 38, 7, p. e100 gkq010.

Research output: Contribution to journalArticle

47 Citations (Scopus)

Parameters for accurate genome alignment

Frith, M. C., Hamada, M. & Paul, B. H. I., 2010 Feb 9, In : BMC Bioinformatics. 11, 80.

Research output: Contribution to journalArticle

114 Citations (Scopus)
2009

Database development and discrimination algorithms for membrane protein functions

Gromiha, M. M., Yabuki, Y., Imai, K., Paul, B. H. I. & Fukui, K., 2009 Jan 1, In : World Academy of Science, Engineering and Technology. 37, p. 358-362 5 p.

Research output: Contribution to journalArticle

HAMSTER: Visualizing microarray experiments as a set of minimum spanning trees

Wan, R., Kiseleva, L., Harada, H., Mamitsuka, H. & Horton, P., 2009 Nov 20, In : Source Code for Biology and Medicine. 4, 8.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Recount: expectation maximization based error correction tool for next generation sequencing data.

Wijaya, E., Frith, M. C., Suzuki, Y. & Paul, B. H. I., 2009 Jan 1, In : Genome informatics. International Conference on Genome Informatics. 23, 1, p. 189-201 13 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)
2008

The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts

Genome Information Integration Project and H-Invitational 2 Consortium, 2008 Jan, In : Nucleic acids research. 36, SUPPL. 1, p. D793-D799

Research output: Contribution to journalArticle

55 Citations (Scopus)
2007

An upper bound on the hardness of exact matrix based motif discovery

Paul, B. H. I. & Fujibuchi, W., 2007 Jan 1, In : Journal of Discrete Algorithms. 5, 4 SPEC. ISS., p. 706-713 8 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

CellMontage: Similar expression profile search server

Fujibuchi, W., Kiseleva, L., Taniguchi, T., Harada, H. & Horton, P., 2007 Nov 1, In : Bioinformatics. 23, 22, p. 3103-3104 2 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

WoLF PSORT: Protein localization predictor

Horton, P., Park, K. J., Obayashi, T., Fujita, N., Harada, H., Adams-Collier, C. J. & Nakai, K., 2007 Jul 1, In : Nucleic acids research. 35, SUPPL.2, p. W585-W587

Research output: Contribution to journalArticle

1630 Citations (Scopus)
2006

Comparative genomic analysis of transcription regulation elements involved in human map kinase g-protein coupling pathway

Polouliakh, N., Natsume, T., Harada, H., Fujibuchchi, W. & Horton, P., 2006 Apr 1, In : Journal of Bioinformatics and Computational Biology. 4, 2, p. 469-482 14 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Inference of scale-free networks from gene expression time series

Daisuke, T. & Horton, P., 2006 Apr 1, In : Journal of Bioinformatics and Computational Biology. 4, 2, p. 503-514 12 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Network-based de-noising improves prediction from microarray data

Kato, T., Murata, Y., Miura, K., Asai, K., Horton, P. B., Tsuda, K. & Fujibuchi, W., 2006 Mar 20, In : BMC Bioinformatics. 7, SUPPL.1, S4.

Research output: Contribution to journalArticle

2 Citations (Scopus)

RaPiDS: an algorithm for rapid expression profile database search.

Paul, B. H. I., Kiseleva, L. & Fujibuchi, W., 2006 Jan 1, In : Genome informatics. International Conference on Genome Informatics. 17, 2, p. 67-76 10 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2005

Discrimination of outer membrane proteins using support vector machines

Park, K. J., Gromiha, M. M., Horton, P. & Suwa, M., 2005 Dec 1, In : Bioinformatics. 21, 23, p. 4223-4229 7 p.

Research output: Contribution to journalArticle

64 Citations (Scopus)
2001
10 Citations (Scopus)
1997
406 Citations (Scopus)
1996
6 Citations (Scopus)
219 Citations (Scopus)
1992

An assessment of neural network and statistical approaches for prediction of E.coli promoter sites

Horton, P. B. & Kanehisa, M., 1992 Aug 25, In : Nucleic acids research. 20, 16, p. 4331-4338 8 p.

Research output: Contribution to journalArticle

59 Citations (Scopus)