Chi-Chuan Hwang

2020

Exceeding the performance of two-tier fat-tree: equality network topology

Yang, C. Y., Liang, C. H., Wu, H. L., Cheng, C. H., Li, C. C., Chen, C. M., Huang, P. L. & Hwang, C. C., 2020 Jan 1, Lecture Notes in Networks and Systems. Springer, p. 1187-1199 13 p. (Lecture Notes in Networks and Systems; vol. 70).

Research output: Chapter in Book/Report/Conference proceeding › Chapter

Trees (mathematics)

Oils and fats

Topology

Routers

Network performance

2019

Beyond the performance of three-tier fat-tree: Equality topology with low diameter

Liang, C. H., Cheng, C. H., Wu, H. L., Li, C. C., Chen, C. M., Huang, P. L., Huang, S. L. & Hwang, C. C., 2019 Feb 19, Proceedings - 2018 International Symposium on Computer, Consumer and Control, IS3C 2018. Institute of Electrical and Electronics Engineers Inc., p. 22-29 8 p. 8644766. (Proceedings - 2018 International Symposium on Computer, Consumer and Control, IS3C 2018).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Oils and fats

Equality

Topology

Routers

Latency

2016

網路拓樸系統及方法

Hwang, C-C., 2016 May 16, Patent No. I544766

Research output: Patent

2015

3 Citations (Scopus)

Draft genome of myxosarcina sp. Strain Gi1, a baeocytous cyanobacterium associated with the marine sponge terpios hoshinota

Yu, C. H., Lu, C. K., Su, H. M., Chiang, T. Y., Hwang, C. C., Liu, T. & Chen, Y. M., 2015 May 1, In : Standards in Genomic Sciences. 10, MAY2015

Research output: Contribution to journal › Article

Cyanobacteria

Porifera

Genome

Genes

Anthozoa

8 Citations (Scopus)

Ecological genomics in Xanthomonas: The nature of genetic adaptation with homologous recombination and host shifts

Huang, C. L., Pu, P. H., Huang, H. J., Sung, H. M., Liaw, H. J., Chen, Y. M., Chen, C. M., Huang, M. B., Osada, N., Gojobori, T., Pai, T. W., Chen, Y. T., Hwang, C. C. & Chiang, T. Y., 2015 Mar 15, In : BMC genomics. 16, 1, 188.

Research output: Contribution to journal › Article

Xanthomonas

Homologous Recombination

Genomics

Genetic Selection

Genome

17 Citations (Scopus)

Modeling investigation of suspended sediment transport in a tidal estuary using a three-dimensional model

Chen, W. B., Liu, W. C., Hsu, M. H. & Hwang, C. C., 2015 May 1, In : Applied Mathematical Modelling. 39, 9, p. 2570-2586 17 p.

Research output: Contribution to journal › Article

Sediment Transport

Suspended sediments

Sediment transport

Sediment

Estuaries

19 Citations (Scopus)

Multistability and condensation of exciton-polaritons below threshold

Lien, J. Y., Chen, Y. N., Ishida, N., Chen, H. B., Hwang, C. C. & Nori, F., 2015 Jan 20, In : Physical Review B - Condensed Matter and Materials Physics. 91, 2, 024511.

Research output: Contribution to journal › Article

Excitons

polaritons

Condensation

condensation

excitons

13 Citations (Scopus)

New bioactive chromanes from litchi chinensis

Lin, Y. C., Chang, J. C., Cheng, S. Y., Wang, C. M., Jhan, Y. L., Lo, I. W., Hsu, Y. M., Liaw, C. C., Hwang, C. C. & Chou, C. H., 2015 Feb, In : Journal of Agricultural and Food Chemistry. 63, 9, p. 2472-2478 7 p.

Research output: Contribution to journal › Article

Litchi

Litchi chinensis

Cells

cell lines

Tocotrienols

Numerical simulation for the ionization energy loss in water

Lin, Y. L., Wu, W. D., Lin, M. C. & Hwang, C. C., 2015 Aug 26, IVNC 2015 - Technical Digest: 28th International Vacuum Nanoelectronics Conference. Zou, Q., She, J., Ye, P., Chen, J. & Deng, S. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 60-61 2 p. 7225532. (IVNC 2015 - Technical Digest: 28th International Vacuum Nanoelectronics Conference).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Ionization potential

Energy dissipation

Charged particles

Heavy ions

Computer simulation

SWITCHLESS NETWORK TOPOLOGY SYSTEM FOR PARALLEL COMPUTATION AND METHOD THEREOF

Hwang, C-C., 2015 Dec 3, Patent No. 9584401

Research output: Patent

Topology

2014

10 Citations (Scopus)

Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus/sinensis complex (Poaceae)

Huang, C-L., Ho, C. W., Chiang, Y. C., Shigemoto, Y., Hsu, T. W., Hwang, C-C., Ge, X. J., Chen, C., Wu, T. H., Chou, C. H., Huang, H-J., Gojobori, T., Osada, N. & Chiang, T-Y., 2014 Dec 1, In : Plant Journal. 80, 5, p. 834-847 14 p.

Research output: Contribution to journal › Article

Miscanthus floridulus

Gene Flow

adaptive radiation

Poaceae

gene flow

12 Citations (Scopus)

Deciphering mycorrhizal fungi in cultivated Phalaenopsis microbiome with next-generation sequencing of multiple barcodes

Huang, C. L., Jian, F. Y., Huang, H. J., Chang, W. C., Wu, W. L., Hwang, C. C., Lee, R. H. & Chiang, T. Y., 2014 May, In : Fungal Diversity. 66, 1, p. 77-88 12 p.

Research output: Contribution to journal › Article

Phalaenopsis

barcoding

mycorrhizal fungi

fungus

rare species

11 Citations (Scopus)

Long-lived quantum coherence and non-Markovianity of photosynthetic complexes

Chen, H. B., Lien, J. Y., Hwang, C. C. & Chen, Y. N., 2014 Apr 29, In : Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 89, 4, 042147.

Research output: Contribution to journal › Article

pigments

vibration mode

proteins

Protein

Memory Effect

6 Citations (Scopus)

Temperate origin and diversification via southward colonization in Fatsia (Araliaceae), an insular endemic genus of the west pacific Rim

Chiang, T. Y., Chen, S. F., Kato, H., Hwang, C. C., Moore, S. J., Hsu, T. W. & Hung, K. H., 2014 Jan 1, In : Tree Genetics and Genomes. 10, 5, p. 1317-1330 14 p.

Research output: Contribution to journal › Article

Fatsia

Araliaceae

Pacific Rim

Islands

colonization

2013

73 Citations (Scopus)

Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly

Chen, Y. C., Liu, T., Yu, C. H., Chiang, T. Y. & Hwang, C. C., 2013 Apr 29, In : PloS one. 8, 4, e62856.

Research output: Contribution to journal › Article

genome assembly

Genes

Genome

GC Rich Sequence

Base Composition

1 Citation (Scopus)

OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly.

Chen, Y. M., Yu, C. H., Hwang, C. C. & Liu, T., 2013, In : BMC systems biology. 7 Suppl 6, p. S7

Research output: Contribution to journal › Article

Connector

Genome

Genes

Sequencing

Graph Search

2012

15 Citations (Scopus)

Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae)

Huang, C. C., Hung, K. H., Wang, W. K., Ho, C. W., Huang, C. L., Hsu, T. W., Osada, N., Hwang, C. C. & Chiang, T. Y., 2012 May 10, In : Gene. 499, 1, p. 194-201 8 p.

Research output: Contribution to journal › Article

Brassicaceae

Arabidopsis

Organelles

Genes

Chloroplast Genes

19 Citations (Scopus)

Footprints of natural and artificial selection for photoperiod pathway genes in Oryza

Huang, C. L., Hung, C. Y., Chiang, Y. C., Hwang, C. C., Hsu, T. W., Huang, C. C., Hung, K. H., Tsai, K. C., Wang, K. H., Osada, N., Schaal, B. A. & Chiang, T. Y., 2012 Jun 1, In : Plant Journal. 70, 5, p. 769-782 14 p.

Research output: Contribution to journal › Article

artificial selection

Genetic Selection

Oryza

Photoperiod

heading

3 Citations (Scopus)

Four-component pharmacophore model for endomorphins toward μ opioid receptor subtypes

Wu, Y. C., Jaglinski, T., Hsieh, J. Y., Chiu, J. J., Chiang, T. Y. & Hwang, C. C., 2012 Feb 1, In : Journal of Molecular Modeling. 18, 2, p. 825-834 10 p.

Research output: Contribution to journal › Article

Opioid Receptors

selectivity

simulation

rings

Amides

5 Citations (Scopus)

Isolation and characterization of microsatellite loci from Pinus massoniana (pinaceae)

Hung, K. H., Lin, C. Y., Huang, C. C., Hwang, C. C., Hsu, T. W., Kuo, Y. L., Wang, W. K., Hung, C. Y. & Chiang, T. Y., 2012 Apr 1, In : Botanical Studies. 53, 2, p. 191-196 6 p.

Research output: Contribution to journal › Article

Pinus massoniana

Pinaceae

microsatellite repeats

loci

Taiwan

2011

5 Citations (Scopus)

Adsorption and reaction of Si₂H₅ on clean and H-covered Si(100)-(2 × 1) surfaces: A computational study

Chen, H. T., Hwang, C-C., Chiang, H. J. & Chang, J. G., 2011 Aug 11, In : Journal of Physical Chemistry C. 115, 31, p. 15369-15374 6 p.

Research output: Contribution to journal › Article

Adsorption

adsorption

Dimers

dimers

Decomposition

4 Citations (Scopus)

A molecular dynamics study on opioid activities of biphalin molecule

Hsieh, J. Y., Chiang, T-Y., Chen, J. L., Chen, Y. W., Lin, H. C. & Hwang, C-C., 2011 Oct 1, In : Journal of Molecular Modeling. 17, 10, p. 2455-2464 10 p.

Research output: Contribution to journal › Article

Torsional stress

Opioid Analgesics

Conformations

Molecular dynamics

Thermodynamic properties

34 Citations (Scopus)

Conservation genetics and phylogeography of endangered and endemic shrub Tetraena mongolica (Zygophyllaceae) in Inner Mongolia, China

Ge, X. J., Hwang, C. C., Liu, Z. H., Huang, C. C., Huang, W. H., Hung, K. H., Wang, W. K. & Chiang, T. Y., 2011 Jan 4, In : BMC Genetics. 12, 1.

Research output: Contribution to journal › Article

Zygophyllaceae

Phylogeography

China

Population

Seed Dispersal

Elastic properties of self-supported circular thin copper films calculated from equilibrium thermal vibration

Chang, H. H., Hwang, C. C. & Shen, Y. L., 2011 Dec 1, In : Journal of Nanoscience and Nanotechnology. 11, 6, p. 4846-4851 6 p.

Research output: Contribution to journal › Article

Vibration

Copper

elastic properties

Hot Temperature

Molecular Dynamics Simulation

12 Citations (Scopus)

Genetic population structure of the alpine species Rhododendron pseudochrysanthum sensu lato (Ericaceae) inferred from chloroplast and nuclear DNA

Huang, C. C., Hung, K. H., Hwang, C. C., Huang, J. C., Lin, H. D., Wang, W. K., Wu, P. Y., Hsu, T. W. & Chiang, T. Y., 2011 May 26, In : BMC Evolutionary Biology. 11, 1, 108.

Research output: Contribution to journal › Article

Ericaceae

Rhododendron

chloroplast DNA

chloroplast

nuclear genome

6 Citations (Scopus)

Molecular dynamical investigation on dislocation near twist-grain boundary of Ni under compression

Chen, J. L., Hsieh, J. Y., Chang, J. G., Lin, H. C., Chiang, H. J., Huang, H. K. & Hwang, C. C., 2011 Nov 1, In : Journal of Applied Physics. 110, 9, 094315.

Research output: Contribution to journal › Article

bicrystals

grain boundaries

nickel

triangles

defects

21 Citations (Scopus)

Population structure of Nouelia insignis (Asteraceae), an endangered species in southwestern China, based on chloroplast DNA sequences: Recent demographic shrinking

Gong, X., Luan, S. S., Hung, K. H., Hwang, C. C., Lin, C. J., Chiang, Y. C. & Chiang, T. Y., 2011 Jan 1, In : Journal of Plant Research. 124, 2, p. 221-230 10 p.

Research output: Contribution to journal › Article

chloroplast DNA

endangered species

Asteraceae

haplotypes

population structure

4 Citations (Scopus)

The operations of quantum logic gates with pure and mixed initial states

Chen, J. L., Li, C. M., Hwang, C. C. & Ho, Y. H., 2011 Apr 7, In : Journal of Chemical Physics. 134, 13, 134103.

Research output: Contribution to journal › Article

Logic gates

logic

Lasers

lasers

Ground state

4 Citations (Scopus)

Thermal stability and morphological variation of carbon nanorings of different radii during the temperature elevating process: A molecular dynamics simulation study

Chen, C., Chang, J. G., Ju, S. P. & Hwang, C-C., 2011 May 1, In : Journal of Nanoparticle Research. 13, 5, p. 1995-2006 12 p.

Research output: Contribution to journal › Article

Nanorings

Thermal Stability

Thermal Deformation

Molecular Dynamics Simulation

Molecular dynamics

2010

4 Citations (Scopus)

Low-energy electronic states of carbon nanocones in an electric field

Chen, J. L., Su, M. H., Hwang, C. C., Lu, J. M. & Tsai, C. C., 2010 Jan 1, In : Nano-Micro Letters. 2, 2, p. 121-125 5 p.

Research output: Contribution to journal › Article

Electronic states

Energy gap

Carbon

Electric fields

Modulation

Molecular dynamics studies of heat and stresses in copper substrate scratch with double-walled nano-cones

Wang, Y. C., Chen, J. L., Chen, C., Chen, Y. C. & Hwang, C. C., 2010 Jul 12, Proceedings of the ASME Micro/Nanoscale Heat and Mass Transfer International Conference 2009, MNHMT2009. p. 583-585 3 p. (Proceedings of the ASME Micro/Nanoscale Heat and Mass Transfer International Conference 2009, MNHMT2009; vol. 2).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Molecular dynamics

Cones

Copper

Substrates

Heat transfer

26 Citations (Scopus)

Molecular dynamics study of multi-walled carbon nanotubes under uniaxial loading

Hwang, C-C., Wang, Y-C., Kuo, Q. Y. & Lu, J. M., 2010 Feb 1, In : Physica E: Low-Dimensional Systems and Nanostructures. 42, 4, p. 775-778 4 p.

Research output: Contribution to journal › Article

Carbon Nanotubes

Molecular dynamics

Carbon nanotubes

carbon nanotubes

molecular dynamics

17 Citations (Scopus)

Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: Evidence of genome-wide admixture

Wang, W. K., Ho, C. W., Hung, K. H., Wang, K. H., Huang, C. C., Araki, H., Hwang, C. C., Hsu, T. W., Osada, N. & Chiang, T. Y., 2010 Oct 1, In : New Phytologist. 188, 2, p. 488-500 13 p.

Research output: Contribution to journal › Article

outcrossing

Arabidopsis

Genome

genetic variation

genome

4 Citations (Scopus)

Reactive wetting behaviors of Sn/Cu systems: A molecular dynamics study

Hsieh, J. Y., Chen, J. L., Chen, C., Lin, H. C., Yang, S. S. & Hwang, C. C., 2010 Jan 1, In : Nano-Micro Letters. 2, 2, p. 60-67 8 p.

Research output: Contribution to journal › Article

Wetting

Molecular dynamics

Temperature

Kinetics

Chemical analysis

29 Citations (Scopus)

Role of hydroxyl groups in the NH_x (x = 1-3) Adsorption on the TiO₂ anatase (101) surface determined by a first-principles study

Chang, J. G., Chen, H. T., Ju, S. P., Chen, H. L. & Hwang, C-C., 2010 Apr 6, In : Langmuir. 26, 7, p. 4813-4821 9 p.

Research output: Contribution to journal › Article

anatase

Hydroxyl Radical

Titanium dioxide

Adsorbates

Valence bands

Stress and temperature analysis of the copper substrate indented with nanotubes and nanocones

Wang, Y. C., Chen, J. L., Liao, M. L., Chen, C., Chen, Y. C. & Hwang, C. C., 2010 Jul 12, Proceedings of the ASME Micro/Nanoscale Heat and Mass Transfer International Conference 2009, MNHMT2009. p. 587-589 3 p. (Proceedings of the ASME Micro/Nanoscale Heat and Mass Transfer International Conference 2009, MNHMT2009; vol. 2).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Nanotubes

Copper

Cones

Aspect ratio

Substrates

2009

5 Citations (Scopus)

Predicting the glass-forming-ability of alloys by molecular dynamics simulation: A working example of ti-co bulk metallic glasses

Kao, S. W., Yang, K. C., Wang, S. H., Hwang, C-C., Lee, P. Y., Huang, R. T. & Chin, T. S., 2009 Jun 1, In : Japanese Journal of Applied Physics. 48, 6, 061301.

Research output: Contribution to journal › Article

Metallic glass

metallic glasses

eutectics

Eutectics

Molecular dynamics

2 Citations (Scopus)

Relativistic molecular dynamics simulations of laser ablation process on the xenon solid

Wang, Y. C., Chen, J. W., Liao, L. D., Lin, H. C. & Hwang, C. C., 2009 Mar 1, In : Journal of Heat Transfer. 131, 3, p. 1-10 10 p.

Research output: Contribution to journal › Article

Xenon

Laser ablation

xenon

laser ablation

Molecular dynamics

5 Citations (Scopus)

Simulation of reduced glass transition temperature of Cu-Zr alloys by molecular dynamics

Kao, S. W., Hwang, C. C. & Chin, T. S., 2009 Apr 9, In : Journal of Applied Physics. 105, 6, 064913.

Research output: Contribution to journal › Article

glass transition temperature

molecular dynamics

simulation

glass

metallic glasses

13 Citations (Scopus)

The nanoindentation of a copper substrate by single-walled carbon nanocone tips: A molecular dynamics study

Hsieh, J. Y., Chen, C., Chen, J. L., Chen, C. I. & Hwang, C. C., 2009 May 18, In : Nanotechnology. 20, 9, 095709.

Research output: Contribution to journal › Article

Nanoindentation

Molecular dynamics

Copper

Carbon

Substrates

4 Citations (Scopus)

Use of molecular dynamics method for dot pattern design of a thin light guide in an LED backlight

Chen, C., Chang, J. G., Fang, Y. B., Hsieh, J. Y. & Hwang, C. C., 2009 Dec 1, In : Optical Engineering. 48, 10, 104002.

Research output: Contribution to journal › Article

Light emitting diodes

Molecular dynamics

light emitting diodes

Boundary conditions

molecular dynamics

2008

Dynamical behavior of water inside a capped single-walled carbon nanotube

Lu, J. M., Wu, C. Y., Hung, C. S., Chien, W. T., Li, W-L., Hwang, C-C. & Wang, Y-C., 2008 Aug 20, 2008 Proceedings of the ASME Micro/Nanoscale Heat Transfer International Conference, MNHT 2008. p. 1129-1133 5 p. (2008 Proceedings of the ASME Micro/Nanoscale Heat Transfer International Conference, MNHT 2008; vol. PART B).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Single-walled carbon nanotubes (SWCN)

carbon nanotubes

Water

water

Nanotubes

22 Citations (Scopus)

Mechanical buckling of multi-walled carbon nanotubes: The effects of slenderness ratio

Lu, J. M., Hwang, C. C., Kuo, Q. Y. & Wang, Y. C., 2008 Mar 1, In : Physica E: Low-Dimensional Systems and Nanostructures. 40, 5, p. 1305-1308 4 p.

Research output: Contribution to journal › Article

Carbon Nanotubes

buckling

Buckling

aspect ratio

Carbon nanotubes

5 Citations (Scopus)

Molecular-dynamic investigation of buckling of double-walled carbon nanotubes under uniaxial compression

Lu, J. M., Wang, Y-C., Chang, J. G., Su, M. H. & Hwang, C-C., 2008 Apr 1, In : Journal of the Physical Society of Japan. 77, 4, 044603.

Research output: Contribution to journal › Article

buckling

carbon nanotubes

molecular dynamics

nanotubes

modulus of elasticity

Nanofabrication with carbon nano-cone as indenter tips

Wang, Y. C., Chen, C., Chen, C. I. & Hwang, C. C., 2008 Dec 1.

Research output: Contribution to conference › Paper

Nanotechnology

Cones

Carbon

Indentation

Buckling

33 Citations (Scopus)

Robust chaos synchronization of noise-perturbed chaotic systems with multiple time-delays

Cheng, C. K., Kuo, H. H., Hou, Y. Y., Hwang, C-C. & Liao, T-L., 2008 May 15, In : Physica A: Statistical Mechanics and its Applications. 387, 13, p. 3093-3102 10 p.

Research output: Contribution to journal › Article

Multiple Time Delays

Chaos Synchronization

Perturbed System

Chaotic System

chaos

2 Citations (Scopus)

Structure-activity relationships of modified C-terminal endomorphin-2 analogues by molecular dynamics simulations

Wang, Y. C., Wu, Y. C., Chen, J. W., Huang, L. S. F., Tsai, F. R. & Hwang, C. C., 2008 Nov 1, In : Journal of Molecular Graphics and Modelling. 27, 4, p. 489-496 8 p.

Research output: Contribution to journal › Article

Bioactivity

Molecular dynamics

analogs

molecular dynamics

Computer simulation

2007

4 Citations (Scopus)

Conformational stability and three-dimensional model of the δ-opioid pharmacophore for the extended antiparallel dimer structure of Met-enkephalin in water

Wu, Y. C., Hsieh, J. Y., Lin, H. C. & Hwang, C. C., 2007 Jan 1, In : Journal of Molecular Modeling. 13, 1, p. 171-177 7 p.

Research output: Contribution to journal › Article

Methionine Enkephalin

three dimensional models

Dimers

Opioid Analgesics

dimers

47 Citations (Scopus)

Electronic properties of AA- and ABC-stacked few-layer graphites

Lu, C. L., Chang, C. P., Huang, Y. C., Ho, J. H., Hwang, C. C. & Lin, M. F., 2007 Feb 1, In : Journal of the Physical Society of Japan. 76, 2, 024701.

Research output: Contribution to journal › Article

electronics

interlayers

electric fields

energy

energy bands

11 Citations (Scopus)

Generation of random non-overlapping dot patterns for light guides using molecular dynamics simulations with variable r-cut and reflective boundary techniques

Chang, J. G., Lee, C. T., Fang, Y. B. & Hwang, C-C., 2007 Dec 1, In : Computer Physics Communications. 177, 11, p. 851-862 12 p.

Research output: Contribution to journal › Article

Molecular dynamics

molecular dynamics

Light sources

Computer simulation

Boundary conditions