• 2768 Citations
  • 28 h-Index
1987 …2020
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Research Output 1987 2020

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Article
2015
2 Citations (Scopus)
Cyanobacteria
Porifera
Genome
Genes
Anthozoa
8 Citations (Scopus)

Ecological genomics in Xanthomonas: The nature of genetic adaptation with homologous recombination and host shifts

Huang, C-L., Pu, P. H., Huang, H-J., Sung, H-M., Liaw, H-J., Chen, Y-M., Chen, C. M., Huang, M. B., Osada, N., Gojobori, T., Pai, T. W., Chen, Y. T., Hwang, C-C. & Chiang, T-Y., 2015 Mar 15, In : BMC genomics. 16, 1, 188.

Research output: Contribution to journalArticle

Xanthomonas
Homologous Recombination
Genomics
Genetic Selection
Genome
17 Citations (Scopus)

Modeling investigation of suspended sediment transport in a tidal estuary using a three-dimensional model

Chen, W. B., Liu, W. C., Hsu, M. H. & Hwang, C. C., 2015 May 1, In : Applied Mathematical Modelling. 39, 9, p. 2570-2586 17 p.

Research output: Contribution to journalArticle

Sediment Transport
Suspended sediments
Sediment transport
Sediment
Estuaries
19 Citations (Scopus)

Multistability and condensation of exciton-polaritons below threshold

Lien, J. Y., Chen, Y. N., Ishida, N., Chen, H. B., Hwang, C. C. & Nori, F., 2015 Jan 20, In : Physical Review B - Condensed Matter and Materials Physics. 91, 2, 024511.

Research output: Contribution to journalArticle

Excitons
polaritons
Condensation
condensation
excitons
12 Citations (Scopus)

New bioactive chromanes from litchi chinensis

Lin, Y. C., Chang, J. C., Cheng, S. Y., Wang, C. M., Jhan, Y. L., Lo, I. W., Hsu, Y. M., Liaw, C. C., Hwang, C-C. & Chou, C. H., 2015 Jan 1, In : Journal of Agricultural and Food Chemistry. 63, 9, p. 2472-2478 7 p.

Research output: Contribution to journalArticle

Litchi
Litchi chinensis
Cells
cell lines
Tocotrienols
2014
8 Citations (Scopus)

Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus/sinensis complex (Poaceae)

Huang, C-L., Ho, C. W., Chiang, Y. C., Shigemoto, Y., Hsu, T. W., Hwang, C-C., Ge, X. J., Chen, C., Wu, T. H., Chou, C. H., Huang, H-J., Gojobori, T., Osada, N. & Chiang, T-Y., 2014 Dec 1, In : Plant Journal. 80, 5, p. 834-847 14 p.

Research output: Contribution to journalArticle

Miscanthus floridulus
Gene Flow
adaptive radiation
Poaceae
gene flow
12 Citations (Scopus)
Phalaenopsis
barcoding
mycorrhizal fungi
fungus
rare species
11 Citations (Scopus)
pigments
vibration mode
proteins
Protein
Memory Effect
6 Citations (Scopus)

Temperate origin and diversification via southward colonization in Fatsia (Araliaceae), an insular endemic genus of the west pacific Rim

Chiang, T. Y., Chen, S. F., Kato, H., Hwang, C. C., Moore, S. J., Hsu, T. W. & Hung, K. H., 2014 Jan 1, In : Tree Genetics and Genomes. 10, 5, p. 1317-1330 14 p.

Research output: Contribution to journalArticle

Fatsia
Araliaceae
Pacific Rim
Islands
colonization
2013
72 Citations (Scopus)

Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly

Chen, Y. C., Liu, T., Yu, C. H., Chiang, T-Y. & Hwang, C-C., 2013 Apr 29, In : PloS one. 8, 4, e62856.

Research output: Contribution to journalArticle

genome assembly
Genes
Genome
GC Rich Sequence
Base Composition
1 Citation (Scopus)

OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly.

Chen, Y. M., Yu, C. H., Hwang, C. C. & Liu, T., 2013, In : BMC systems biology. 7 Suppl 6, p. S7

Research output: Contribution to journalArticle

Connector
Genome
Genes
Sequencing
Graph Search
2012
15 Citations (Scopus)

Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae)

Huang, C. C., Hung, K. H., Wang, W. K., Ho, C. W., Huang, C-L., Hsu, T. W., Osada, N., Hwang, C-C. & Chiang, T-Y., 2012 May 10, In : Gene. 499, 1, p. 194-201 8 p.

Research output: Contribution to journalArticle

Brassicaceae
Arabidopsis
Organelles
Genes
Chloroplast Genes
19 Citations (Scopus)

Footprints of natural and artificial selection for photoperiod pathway genes in Oryza

Huang, C. L., Hung, C. Y., Chiang, Y. C., Hwang, C. C., Hsu, T. W., Huang, C. C., Hung, K. H., Tsai, K. C., Wang, K. H., Osada, N., Schaal, B. A. & Chiang, T. Y., 2012 Jun 1, In : Plant Journal. 70, 5, p. 769-782 14 p.

Research output: Contribution to journalArticle

artificial selection
Genetic Selection
Oryza
Photoperiod
heading
3 Citations (Scopus)

Four-component pharmacophore model for endomorphins toward μ opioid receptor subtypes

Wu, Y. C., Jaglinski, T., Hsieh, J. Y., Chiu, J. J., Chiang, T. Y. & Hwang, C. C., 2012 Feb 1, In : Journal of Molecular Modeling. 18, 2, p. 825-834 10 p.

Research output: Contribution to journalArticle

Opioid Receptors
selectivity
simulation
rings
Amides
5 Citations (Scopus)

Isolation and characterization of microsatellite loci from Pinus massoniana (pinaceae)

Hung, K. H., Lin, C. Y., Huang, C. C., Hwang, C-C., Hsu, T. W., Kuo, Y. L., Wang, W. K., Hung, C. Y. & Chiang, T-Y., 2012 Apr 1, In : Botanical Studies. 53, 2, p. 191-196 6 p.

Research output: Contribution to journalArticle

Pinus massoniana
Pinaceae
microsatellite repeats
loci
Taiwan
2011
5 Citations (Scopus)

Adsorption and reaction of Si2H5 on clean and H-covered Si(100)-(2 × 1) surfaces: A computational study

Chen, H. T., Hwang, C-C., Chiang, H. J. & Chang, J. G., 2011 Aug 11, In : Journal of Physical Chemistry C. 115, 31, p. 15369-15374 6 p.

Research output: Contribution to journalArticle

Adsorption
adsorption
Dimers
dimers
Decomposition
4 Citations (Scopus)

A molecular dynamics study on opioid activities of biphalin molecule

Hsieh, J. Y., Chiang, T-Y., Chen, J. L., Chen, Y. W., Lin, H. C. & Hwang, C-C., 2011 Oct 1, In : Journal of Molecular Modeling. 17, 10, p. 2455-2464 10 p.

Research output: Contribution to journalArticle

Torsional stress
Opioid Analgesics
Conformations
Molecular dynamics
Thermodynamic properties
34 Citations (Scopus)

Conservation genetics and phylogeography of endangered and endemic shrub Tetraena mongolica (Zygophyllaceae) in Inner Mongolia, China

Ge, X. J., Hwang, C. C., Liu, Z. H., Huang, C. C., Huang, W. H., Hung, K. H., Wang, W. K. & Chiang, T. Y., 2011 Jan 4, In : BMC Genetics. 12, 1.

Research output: Contribution to journalArticle

Zygophyllaceae
Phylogeography
China
Population
Seed Dispersal

Elastic properties of self-supported circular thin copper films calculated from equilibrium thermal vibration

Chang, H. H., Hwang, C. C. & Shen, Y. L., 2011 Dec 1, In : Journal of Nanoscience and Nanotechnology. 11, 6, p. 4846-4851 6 p.

Research output: Contribution to journalArticle

Vibration
Copper
elastic properties
Hot Temperature
Molecular Dynamics Simulation
12 Citations (Scopus)

Genetic population structure of the alpine species Rhododendron pseudochrysanthum sensu lato (Ericaceae) inferred from chloroplast and nuclear DNA

Huang, C. C., Hung, K. H., Hwang, C-C., Huang, J. C., Lin, H. D., Wang, W. K., Wu, P. Y., Hsu, T. W. & Chiang, T-Y., 2011 May 26, In : BMC Evolutionary Biology. 11, 1, 108.

Research output: Contribution to journalArticle

Ericaceae
Rhododendron
chloroplast DNA
chloroplast
nuclear genome
6 Citations (Scopus)

Molecular dynamical investigation on dislocation near twist-grain boundary of Ni under compression

Chen, J. L., Hsieh, J. Y., Chang, J. G., Lin, H. C., Chiang, H. J., Huang, H. K. & Hwang, C. C., 2011 Nov 1, In : Journal of Applied Physics. 110, 9, 094315.

Research output: Contribution to journalArticle

bicrystals
grain boundaries
nickel
triangles
defects
21 Citations (Scopus)

Population structure of Nouelia insignis (Asteraceae), an endangered species in southwestern China, based on chloroplast DNA sequences: Recent demographic shrinking

Gong, X., Luan, S. S., Hung, K. H., Hwang, C. C., Lin, C. J., Chiang, Y. C. & Chiang, T. Y., 2011 Jan 1, In : Journal of Plant Research. 124, 2, p. 221-230 10 p.

Research output: Contribution to journalArticle

chloroplast DNA
endangered species
Asteraceae
haplotypes
population structure
4 Citations (Scopus)

The operations of quantum logic gates with pure and mixed initial states

Chen, J. L., Li, C-M., Hwang, C-C. & Ho, Y. H., 2011 Apr 7, In : Journal of Chemical Physics. 134, 13, 134103.

Research output: Contribution to journalArticle

Logic gates
logic
Lasers
lasers
Ground state
4 Citations (Scopus)
Nanorings
Thermal Stability
Thermal Deformation
Molecular Dynamics Simulation
Molecular dynamics
2010
4 Citations (Scopus)

Low-energy electronic states of carbon nanocones in an electric field

Chen, J. L., Su, M. H., Hwang, C. C., Lu, J. M. & Tsai, C. C., 2010 Jan 1, In : Nano-Micro Letters. 2, 2, p. 121-125 5 p.

Research output: Contribution to journalArticle

Electronic states
Energy gap
Carbon
Electric fields
Modulation
26 Citations (Scopus)

Molecular dynamics study of multi-walled carbon nanotubes under uniaxial loading

Hwang, C-C., Wang, Y-C., Kuo, Q. Y. & Lu, J. M., 2010 Feb 1, In : Physica E: Low-Dimensional Systems and Nanostructures. 42, 4, p. 775-778 4 p.

Research output: Contribution to journalArticle

Carbon Nanotubes
Molecular dynamics
Carbon nanotubes
carbon nanotubes
molecular dynamics
17 Citations (Scopus)

Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: Evidence of genome-wide admixture

Wang, W. K., Ho, C. W., Hung, K. H., Wang, K. H., Huang, C. C., Araki, H., Hwang, C-C., Hsu, T. W., Osada, N. & Chiang, T-Y., 2010 Oct 1, In : New Phytologist. 188, 2, p. 488-500 13 p.

Research output: Contribution to journalArticle

outcrossing
Arabidopsis
Genome
genetic variation
genome
4 Citations (Scopus)

Reactive wetting behaviors of Sn/Cu systems: A molecular dynamics study

Hsieh, J. Y., Chen, J. L., Chen, C., Lin, H. C., Yang, S. S. & Hwang, C-C., 2010 Jan 1, In : Nano-Micro Letters. 2, 2, p. 60-67 8 p.

Research output: Contribution to journalArticle

Wetting
Molecular dynamics
Temperature
Kinetics
Chemical analysis
29 Citations (Scopus)

Role of hydroxyl groups in the NHx (x = 1-3) Adsorption on the TiO2 anatase (101) surface determined by a first-principles study

Chang, J. G., Chen, H. T., Ju, S. P., Chen, H. L. & Hwang, C-C., 2010 Apr 6, In : Langmuir. 26, 7, p. 4813-4821 9 p.

Research output: Contribution to journalArticle

anatase
Hydroxyl Radical
Titanium dioxide
Adsorbates
Valence bands
2009
5 Citations (Scopus)

Predicting the glass-forming-ability of alloys by molecular dynamics simulation: A working example of ti-co bulk metallic glasses

Kao, S. W., Yang, K. C., Wang, S. H., Hwang, C-C., Lee, P. Y., Huang, R. T. & Chin, T. S., 2009 Jun 1, In : Japanese Journal of Applied Physics. 48, 6, 061301.

Research output: Contribution to journalArticle

Metallic glass
metallic glasses
eutectics
Eutectics
Molecular dynamics
2 Citations (Scopus)

Relativistic molecular dynamics simulations of laser ablation process on the xenon solid

Wang, Y. C., Chen, J. W., Liao, L. D., Lin, H. C. & Hwang, C. C., 2009 Mar 1, In : Journal of Heat Transfer. 131, 3, p. 1-10 10 p.

Research output: Contribution to journalArticle

Xenon
Laser ablation
xenon
laser ablation
Molecular dynamics
4 Citations (Scopus)

Simulation of reduced glass transition temperature of Cu-Zr alloys by molecular dynamics

Kao, S. W., Hwang, C. C. & Chin, T. S., 2009 Apr 9, In : Journal of Applied Physics. 105, 6, 064913.

Research output: Contribution to journalArticle

glass transition temperature
molecular dynamics
simulation
glass
metallic glasses
13 Citations (Scopus)

The nanoindentation of a copper substrate by single-walled carbon nanocone tips: A molecular dynamics study

Hsieh, J. Y., Chen, C., Chen, J. L., Chen, C. I. & Hwang, C-C., 2009 May 18, In : Nanotechnology. 20, 9, 095709.

Research output: Contribution to journalArticle

Nanoindentation
Molecular dynamics
Copper
Carbon
Substrates
3 Citations (Scopus)

Use of molecular dynamics method for dot pattern design of a thin light guide in an LED backlight

Chen, C., Chang, J. G., Fang, Y. B., Hsieh, J. Y. & Hwang, C-C., 2009 Dec 1, In : Optical Engineering. 48, 10, 104002.

Research output: Contribution to journalArticle

Light emitting diodes
Molecular dynamics
light emitting diodes
Boundary conditions
molecular dynamics
2008
22 Citations (Scopus)

Mechanical buckling of multi-walled carbon nanotubes: The effects of slenderness ratio

Lu, J. M., Hwang, C. C., Kuo, Q. Y. & Wang, Y. C., 2008 Mar 1, In : Physica E: Low-Dimensional Systems and Nanostructures. 40, 5, p. 1305-1308 4 p.

Research output: Contribution to journalArticle

Carbon Nanotubes
buckling
Buckling
aspect ratio
Carbon nanotubes
5 Citations (Scopus)

Molecular-dynamic investigation of buckling of double-walled carbon nanotubes under uniaxial compression

Lu, J. M., Wang, Y-C., Chang, J. G., Su, M. H. & Hwang, C-C., 2008 Apr 1, In : Journal of the Physical Society of Japan. 77, 4, 044603.

Research output: Contribution to journalArticle

buckling
carbon nanotubes
molecular dynamics
nanotubes
modulus of elasticity
33 Citations (Scopus)

Robust chaos synchronization of noise-perturbed chaotic systems with multiple time-delays

Cheng, C. K., Kuo, H. H., Hou, Y. Y., Hwang, C-C. & Liao, T-L., 2008 May 15, In : Physica A: Statistical Mechanics and its Applications. 387, 13, p. 3093-3102 10 p.

Research output: Contribution to journalArticle

Multiple Time Delays
Chaos Synchronization
Perturbed System
Chaotic System
chaos
2 Citations (Scopus)

Structure-activity relationships of modified C-terminal endomorphin-2 analogues by molecular dynamics simulations

Wang, Y-C., Wu, Y. C., Chen, J-W., Huang, L. S. F., Tsai, F. R. & Hwang, C-C., 2008 Nov 1, In : Journal of Molecular Graphics and Modelling. 27, 4, p. 489-496 8 p.

Research output: Contribution to journalArticle

Bioactivity
Molecular dynamics
analogs
molecular dynamics
Computer simulation
2007
4 Citations (Scopus)

Conformational stability and three-dimensional model of the δ-opioid pharmacophore for the extended antiparallel dimer structure of Met-enkephalin in water

Wu, Y. C., Hsieh, J. Y., Lin, H. C. & Hwang, C. C., 2007 Jan 1, In : Journal of Molecular Modeling. 13, 1, p. 171-177 7 p.

Research output: Contribution to journalArticle

Methionine Enkephalin
three dimensional models
Dimers
Opioid Analgesics
dimers
47 Citations (Scopus)

Electronic properties of AA- and ABC-stacked few-layer graphites

Lu, C. L., Chang, C. P., Huang, Y. C., Ho, J. H., Hwang, C-C. & Lin, M-F., 2007 Feb, In : Journal of the Physical Society of Japan. 76, 2, 024701.

Research output: Contribution to journalArticle

electronics
interlayers
electric fields
energy
energy bands
10 Citations (Scopus)

Generation of random non-overlapping dot patterns for light guides using molecular dynamics simulations with variable r-cut and reflective boundary techniques

Chang, J. G., Lee, C. T., Fang, Y. B. & Hwang, C-C., 2007 Dec 1, In : Computer Physics Communications. 177, 11, p. 851-862 12 p.

Research output: Contribution to journalArticle

Molecular dynamics
molecular dynamics
Light sources
Computer simulation
Boundary conditions
4 Citations (Scopus)

Molecular dynamics simulation for nanoscale deep indentation of a copper substrate by single-walled carbon nanotube tips

Hsieh, J. Y., Huang, L. S., Chen, C., Lo, H. C. & Hwang, C-C., 2007 Oct 17, In : Nanotechnology. 18, 41, 415701.

Research output: Contribution to journalArticle

Single-walled carbon nanotubes (SWCN)
Indentation
Molecular dynamics
Copper
Computer simulation
3 Citations (Scopus)

Structure-activity relationships of Leu-enkephalin analog with (4-carboxamido)phenylalanine substituted for tyrosine: A molecular dynamics study

Wang, Y. C., Wu, Y. C., Yeh, C. C. & Hwang, C. C., 2007 Jun 15, In : Biopolymers. 86, 3, p. 231-239 9 p.

Research output: Contribution to journalArticle

Leucine Enkephalin
Molecular Dynamics Simulation
Structure-Activity Relationship
Tyrosine
Molecular dynamics
3 Citations (Scopus)

Structure-activity relationships of αs1-casomorphin using AMI calculations and molecular dynamics simulations

Wu, Y. C., Lin, J. S. & Hwang, C-C., 2007 Jun 28, In : Journal of Physical Chemistry B. 111, 25, p. 7377-7383 7 p.

Research output: Contribution to journalArticle

Amides
Opioid Analgesics
amides
Molecular dynamics
molecular dynamics
6 Citations (Scopus)

The behavior of water molecules nanoconfined between parallel Au plates

Wu, Y. C., Lin, J. S., Ju, S. P., Lee, W. J., Lin, Y. S. & Hwang, C. C., 2007 Apr 1, In : Computational Materials Science. 39, 2, p. 359-364 6 p.

Research output: Contribution to journalArticle

parallel plates
Molecules
Water
Lattice Structure
water
2006
27 Citations (Scopus)

Absorption spectra of trilayer rhombohedral graphite

Lu, C. L., Lin, H. C., Hwang, C-C., Wang, J., Lin, M-F. & Chang, C. P., 2006 Dec 7, In : Applied Physics Letters. 89, 22, 221910.

Research output: Contribution to journalArticle

graphite
absorption spectra
energy bands
optical spectrum
interlayers
75 Citations (Scopus)

Coulomb excitations in AA- and AB-stacked bilayer graphites

Ho, J. H., Lu, C. L., Hwang, C-C., Chang, C. P. & Lin, M-F., 2006 Aug 21, In : Physical Review B - Condensed Matter and Materials Physics. 74, 8, 085406.

Research output: Contribution to journalArticle

Plasmons
plasmons
Momentum
Graphite
excitation
7 Citations (Scopus)

Electronic properties of capped, finite-length armchair carbon nanotubes in an electric field

Chen, C., Tsai, C. C., Lu, J. M. & Hwang, C. C., 2006 Jun 29, In : Journal of Physical Chemistry B. 110, 25, p. 12384-12387 4 p.

Research output: Contribution to journalArticle

Carbon Nanotubes
Electronic properties
Carbon nanotubes
Energy gap
carbon nanotubes
4 Citations (Scopus)

Electronic properties of carbon tori in external fields

Shyu, F. L., Tsai, C-C., Lin, M-F. & Hwang, C-C., 2006 Oct 1, In : Journal of the Physical Society of Japan. 75, 10, 104710.

Research output: Contribution to journalArticle

carbon
electronics
electric fields
magnetic fields
flux density
86 Citations (Scopus)

Exponential synchronization of a class of neural networks with time-varying delays

Cheng, C. J., Liao, T. L., Yan, J. J. & Hwang, C. C., 2006 Feb 1, In : IEEE Transactions on Systems, Man, and Cybernetics, Part B: Cybernetics. 36, 1, p. 209-215 7 p.

Research output: Contribution to journalArticle

Hopfield neural networks
Cellular neural networks
Synchronization
Neural networks
Hamiltonians