Chung-I Li

Associate Professor

  • 646 Citations
  • 15 h-Index
20112020

Research output per year

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Research Output

  • 646 Citations
  • 15 h-Index
  • 41 Article
2020
Open Access
2019

A new demerit control chart for monitoring the quality of multivariate Poisson processes

Li, C. I., Pan, J. N. & Huang, M. H., 2019, In : Journal of Applied Statistics. 46, 4, p. 1-20

Research output: Contribution to journalArticle

Detecting the process changes for multivariate nonlinear profile data

Pan, J. N., Li, C. I. & Lu, M. Z., 2019 Oct 1, In : Quality and Reliability Engineering International. 35, 6, p. 1890-1910 21 p.

Research output: Contribution to journalArticle

Linear profiles monitoring in the presence of nonnormal random errors

Li, C. I. & Tsai, T. R., 2019 Dec 1, In : Quality and Reliability Engineering International. 35, 8, p. 2579-2592 14 p.

Research output: Contribution to journalArticle

Monitoring nonlinear profile data using support vector regression method

Li, C. I., Pan, J. N. & Liao, C. H., 2019 Feb 1, In : Quality and Reliability Engineering International. 35, 1, p. 127-135 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)
2018

Control charts based on quasi-likelihood estimation for monitoring profiles

Li, C. I., 2018 Feb 11, In : Journal of Statistical Computation and Simulation. 88, 3, p. 457-470 14 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Monitoring the process quality for multistage systems with multiple characteristics

Pan, J. N., Li, C. I. & Hsu, J. W., 2018 Jan 1, In : International Journal of Quality and Reliability Management. 35, 1, p. 50-63 14 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

RnaSeqSampleSize: Real data based sample size estimation for RNA sequencing

Zhao, S., Li, C. I., Guo, Y., Sheng, Q. & Shyr, Y., 2018 May 30, In : BMC Bioinformatics. 19, 1, 191.

Research output: Contribution to journalArticle

10 Citations (Scopus)
2017

Bivariate Poisson models with varying offsets: An application to the paired mitochondrial DNA dataset

Su, P. F., Mau, Y. L., Guo, Y., Li, C. I., Liu, Q., Boice, J. D. & Shyr, Y., 2017 Mar 1, In : Statistical Applications in Genetics and Molecular Biology. 16, 1, p. 47-58 12 p.

Research output: Contribution to journalArticle

Identification of active miRNA promoters from nuclear run-on RNA sequencing

Liu, Q., Wang, J., Zhao, Y., Li, C. I., Stengel, K. R., Acharya, P., Johnston, G., Hiebert, S. W. & Shyr, Y., 2017 Jul 1, In : Nucleic acids research. 45, 13, e121.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Power and sample size calculations for high-throughput sequencing-based experiments

Li, C-I., Samuels, D. C., Zhao, Y. Y., Shyr, Y. & Guo, Y., 2017 May 30, In : Briefings in bioinformatics. 19, 6, p. 1247-1255 9 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)
2016

A new approach to detecting the process changes for multistage systems

Pan, J. N., Li, C. I. & Wu, J. J., 2016 Nov 15, In : Expert Systems With Applications. 62, p. 293-301 9 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Diverse, biologically relevant, and targetable gene rearrangements in triple-negative breast cancer and other malignancies

Shaver, T. M., Lehmann, B. D., Beeler, J. S., Li, C. I., Li, Z., Jin, H., Stricker, T. P., Shyr, Y. & Pietenpol, J. A., 2016 Aug 15, In : Cancer Research. 76, 16, p. 4850-4860 11 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
5 Citations (Scopus)

Practicability of detecting somatic point mutation from RNA high throughput sequencing data

Sheng, Q., Zhao, S., Li, C. I., Shyr, Y. & Guo, Y., 2016 May 1, In : Genomics. 107, 5, p. 163-169 7 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
2 Citations (Scopus)
2015

Determining the optimal allocation of parameters for multivariate measurement system analysis

Pan, J-N., Li, C-I. & Ou, S. C., 2015 Jun 4, In : Expert Systems With Applications. 42, 20, p. 7036-7045 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Transfer RNA detection by small RNA deep sequencing and disease association with myelodysplastic syndromes

Guo, Y., Bosompem, A., Mohan, S., Erdogan, B., Ye, F., Vickers, K. C., Sheng, Q., Zhao, S., Li, C. I., Su, P. F., Jagasia, M., Strickland, S. A., Griffiths, E. A. & Kim, A. S., 2015 Sep 24, In : BMC genomics. 16, 1, 727.

Research output: Contribution to journalArticle

24 Citations (Scopus)
2014

Dose to the inferior pharyngeal constrictor predicts prolonged gastrostomy tube dependence with concurrent intensity-modulated radiation therapy and chemotherapy for locally-advanced head and neck cancer

Vlacich, G., Spratt, D. E., Diaz, R., Phillips, J. G., Crass, J., Li, C. I., Shyr, Y. & Cmelak, A. J., 2014 Mar, In : Radiotherapy and Oncology. 110, 3, p. 435-440 6 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Evaluating environmental performance using new process capability indices for autocorrelated data

Pan, J. N., Li, C. I. & Chen, F. Y., 2014 Oct 1, In : Environmental Monitoring and Assessment. 186, 10, p. 6369-6384 16 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

New capability indices for measuring the performance of a multidimensional machining process

Pan, J-N. & Li, C-I., 2014 Apr 1, In : Expert Systems With Applications. 41, 5, p. 2409-2414 6 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Oligoclonal CD8+ T cells play a critical role in the development of hypertension

Trott, D. W., Thabet, S. R., Kirabo, A., Saleh, M. A., Itani, H., Norlander, A. E., Wu, J., Goldstein, A., Arendshorst, W. J., Madhur, M. S., Chen, W., Li, C. I., Shyr, Y. & Harrison, D. G., 2014 Nov 1, In : Hypertension. 64, 5, p. 1108-1115 8 p.

Research output: Contribution to journalArticle

78 Citations (Scopus)

Phase II study of bendamustine in relapsed chemotherapy sensitive or resistant small-cell lung cancer

Lammers, P. E., Shyr, Y., Li, C. I., Hutchison, A. S., Sandler, A., Carbone, D. P., Johnson, D. H., Keedy, V. L. & Horn, L., 2014 Apr, In : Journal of Thoracic Oncology. 9, 4, p. 559-562 4 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Phase II trial of sorafenib and erlotinib in advanced pancreatic cancer

Cardin, D. B., Goff, L., Li, C. I., Shyr, Y., Winkler, C., DeVore, R., Schlabach, L., Holloway, M., McClanahan, P., Meyer, K., Grigorieva, J., Berlin, J. & Chan, E., 2014 Jun 1, In : Cancer medicine. 3, 3, p. 572-579 8 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

RNAseqPS: A web tool for estimating sample size and power for RNAseq experiment

Guo, Y., Zhao, S., Li, C. I., Sheng, Q. & Shyr, Y., 2014 Oct 13, In : Cancer Informatics. 13, p. 1-5 5 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)
4 Citations (Scopus)

Statistical strategies for microRNAseq batch effect reduction

Guo, Y., Zhao, S., Su, P-F., Li, C-I., Ye, F., Flynn, C. R. & Shyr, Y., 2014 Jun 1, In : Translational Cancer Research. 3, 3, p. 260-265 6 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

The design of and R control charts for skew normal distributed data

Li, C-I., Su, N. C., Su, P-F. & Shyr, Y., 2014 Dec 2, In : Communications in Statistics - Theory and Methods. 43, 23, p. 4908-4924 17 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2013

An evaluation of allele frequency estimation accuracy using pooled sequencing data

Guo, Y., Cai, Q., Li, C., Li, J., Li, C. I., Courtney, R., Zheng, W. & Long, J., 2013, In : International Journal of Computational Biology and Drug Design. 6, 4, p. 279-293 15 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Evaluation of allele frequency estimation using pooled sequencing data simulation

Guo, Y., Samuels, D. C., Li, J., Clark, T., Li, C. I. & Shyr, Y., 2013 Mar 7, In : The Scientific World Journal. 2013, 895496.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Evaluation of read count based RNAseq analysis methods

Guo, Y., Li, C. I., Ye, F. & Shyr, Y., 2013 Dec 9, In : BMC genomics. 14, SUPP 8, S2.

Research output: Contribution to journalArticle

34 Citations (Scopus)

MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis.

Guo, Y., Li, J., Li, C. I., Shyr, Y. & Samuels, D. C., 2013 May 1, In : Unknown Journal. 29, 9, p. 1210-1211 2 p.

Research output: Contribution to journalArticle

59 Citations (Scopus)
21 Citations (Scopus)
11 Citations (Scopus)

Very Low-Level Heteroplasmy mtDNA Variations Are Inherited in Humans

Guo, Y., Li, C. I., Sheng, Q., Winther, J. F., Cai, Q., Boice, J. D. & Shyr, Y., 2013 Dec 20, In : Journal of Genetics and Genomics. 40, 12, p. 607-615 9 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)
2012

Exome sequencing generates high quality data in non-target regions

Guo, Y., Long, J., He, J., Li, C. I., Cai, Q., Shu, X. O., Zheng, W. & Li, C., 2012 May 20, In : BMC genomics. 13, 1, 194.

Research output: Contribution to journalArticle

66 Citations (Scopus)

Sample size determination for estimating multivariate process capability indices based on lower confidence limits

Li, C. I. & Pan, J. N., 2012 Sep 1, In : Journal of Applied Statistics. 39, 9, p. 1911-1920 10 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

The effect of strand bias in Illumina short-read sequencing data

Guo, Y., Li, J., Li, C. I., Long, J., Samuels, D. C. & Shyr, Y., 2012 Nov 24, In : BMC genomics. 13, 1, 666.

Research output: Contribution to journalArticle

62 Citations (Scopus)

The use of next generation sequencing technology to study the effect of radiation therapy on mitochondrial DNA mutation

Guo, Y., Cai, Q., Samuels, D. C., Ye, F., Long, J., Li, C. I., Winther, J. F., Tawn, E. J., Stovall, M., Lähteenmäki, P., Malila, N., Levy, S., Shaffer, C., Shyr, Y., Shu, X. O. & Boice, J. D., 2012 May 15, In : Mutation Research - Genetic Toxicology and Environmental Mutagenesis. 744, 2, p. 154-160 7 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)
2011

Analyzing survival curves at a fixed point in time for paired and clustered right-censored data

Su, P. F., Chi, Y., Li, C. I., Shyr, Y. & Liao, Y. D., 2011 Apr 1, In : Computational Statistics and Data Analysis. 55, 4, p. 1617-1628 12 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)