• 416 Citations
  • 11 h-Index
20032019

Research output per year

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Research Output

  • 416 Citations
  • 11 h-Index
  • 27 Article
  • 8 Conference contribution
  • 2 Conference article
  • 1 Editorial
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Article
2019

SigUNet: Signal peptide recognition based on semantic segmentation

Wu, J. M., Liu, Y. C. & Chang, D. T. H., 2019 Dec 20, In : BMC Bioinformatics. 20, 677.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)
2018

An automatic method to calculate heart rate from zebrafish larval cardiac videos

Kang, C. P., Tu, H. C., Fu, T. F., Wu, J. M., Chu, P. H. & Chang, D. T. H., 2018 May 9, In : BMC Bioinformatics. 19, 1, 169.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2016

CCProf: Exploring conformational change profile of proteins

Chang, C. W., Chou, C. W. & Chang, D. T. H., 2016 Jan 1, In : Database. 2016, baw029.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2 Citations (Scopus)
2015

Light-RCV: A lightweight read coverage viewer for next generation sequencing data

Chang, C. W., Lee, W. B., Chen-Deng, A., Liu, T., Tseng, J. T. & Chang, D. T. H., 2015 Dec 9, In : BMC Bioinformatics. 16, 18, S11.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2014
2 Citations (Scopus)
2013

Combining Phylogenetic Profiling-Based and Machine Learning-Based Techniques to Predict Functional Related Proteins

Lin, T. W., Wu, J. W. & Chang, D. T. H., 2013 Sep 19, In : PloS one. 8, 9, e75940.

Research output: Contribution to journalArticle

10 Citations (Scopus)

PRASA: An integrated web server that analyzes protein interaction types

Fan, C. Y., Bai, Y. H., Huang, C. Y., Yao, T. J., Chiang, W. H. & Chang, D. T. H., 2013 Apr 10, In : Gene. 518, 1, p. 78-83 6 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

YGA: Identifying distinct biological features between yeast gene sets

Chang, D. T. H., Li, W. S., Bai, Y. H. & Wu, W. S., 2013 Apr 10, In : Gene. 518, 1, p. 26-34 9 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2012

AH-DB: Collecting protein structure pairs before and after binding

Chang, D. T. H., Yao, T. J., Fan, C. Y., Chiang, C. Y. & Bai, Y. H., 2012 Jan 1, In : Nucleic acids research. 40, D1, p. D472-D478

Research output: Contribution to journalArticle

10 Citations (Scopus)

AutoBind: Automatic extraction of protein-ligand-binding affinity data from biological literature

Chang, D. T. H., Ke, C. H., Lin, J. H. & Chiang, J. H., 2012 Aug 1, In : Bioinformatics. 28, 16, p. 2162-2168 7 p., bts367.

Research output: Contribution to journalArticle

8 Citations (Scopus)

DBD2BS: Connecting a DNA-binding protein with its binding sites

Chien, T. Y., Lin, C. K., Lin, C. W., Weng, Y. Z., Chen, C. Y. & Chang, D. T. H., 2012 Jul 1, In : Nucleic acids research. 40, W1, p. W173-W179

Research output: Contribution to journalArticle

3 Citations (Scopus)

Predicting target DNA sequences of DNA-binding proteins based on unbound structures

Chen, C. Y., Chien, T. Y., Lin, C. K., Lin, C. W., Weng, Y. Z. & Chang, D. T. H., 2012 Feb 1, In : PloS one. 7, 2, e30446.

Research output: Contribution to journalArticle

19 Citations (Scopus)
2011

A study on the flexibility of enzyme active sites

Weng, Y. Z., Chang, D. T., Huang, Y. F. & Lin, C. W., 2011 Feb 15, In : BMC Bioinformatics. 12, SUPPL. 1, S32.

Research output: Contribution to journalArticle

11 Citations (Scopus)

YPA: An integrated repository of promoter features in Saccharomyces cerevisiae

Chang, D. T. H., Huang, C. Y., Wu, C. Y. & Wu, W. S., 2011 Jan 1, In : Nucleic acids research. 39, SUPPL. 1, p. D647-D652

Research output: Contribution to journalArticle

29 Citations (Scopus)
2010

On the design of optimization algorithms for prediction of molecular interactions

Chang, D. T. H., Lin, J. H., Hsieh, C. H. & Oyang, Y. J., 2010 Jun 1, In : International Journal on Artificial Intelligence Tools. 19, 3, p. 267-280 14 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Predicting microRNA precursors with a generalized Gaussian components based density estimation algorithm

Hsieh, C. H., Chang, D. T., Hsueh, C. H., Wu, C. Y. & Oyang, Y. J., 2010 Jan 18, In : BMC Bioinformatics. 11, SUPPLL.1, S52.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Predicting protein-protein interactions in unbalanced data using the primary structure of proteins

Yu, C. Y., Chou, L. C. & Chang, D. T., 2010 Apr 2, In : BMC Bioinformatics. 11, 167.

Research output: Contribution to journalArticle

57 Citations (Scopus)

Predicting the protein-protein interactions using primary structures with predicted protein surface

Chang, D. T., Syu, Y. T. & Lin, P. C., 2010 Jan 18, In : BMC Bioinformatics. 11, SUPPLL.1, S3.

Research output: Contribution to journalArticle

27 Citations (Scopus)
2009

seeMotif: Exploring and visualizing sequence motifs in 3D structures

Chang, D. T. H., Chien, T. Y. & Chen, C. Y., 2009 Aug 4, In : Nucleic acids research. 37, SUPPL. 2, p. W552-W558

Research output: Contribution to journalArticle

2 Citations (Scopus)
2008

E1DS: catalytic site prediction based on 1D signatures of concurrent conservation.

Chien, T. Y., Chang, D. T. H., Chen, C. Y., Weng, Y. Z. & Hsu, C. M., 2008 Jul 1, In : Nucleic acids research. 36, Web Server issue, p. W291-296

Research output: Contribution to journalArticle

10 Citations (Scopus)

Prediction of protein secondary structures with a novel kernel density estimation based classifier

Chang, D. T. H., Ou, Y. Y., Hung, H. G., Yang, M. H., Chen, C. Y. & Oyang, Y. J., 2008 Dec 1, In : BMC Research Notes. 1, 51.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Real value prediction of protein solvent accessibility using enhanced PSSM features

Chang, D. T. H., Huang, H. Y., Syu, Y. T. & Wu, C. P., 2008 Dec 12, In : BMC Bioinformatics. 9, SUPPL. 12, S12.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Using a kernel density estimation based classifier to predict species-specific microRNA precursors

Chang, D. T. H., Wang, C. C. & Chen, J. W., 2008 Dec 12, In : BMC Bioinformatics. 9, SUPPL. 12, S2.

Research output: Contribution to journalArticle

32 Citations (Scopus)
2006

Protemot: Prediction of protein binding sites with automatically extracted geometrical templates

Chang, D. T. H., Weng, Y. Z., Lin, J. H., Hwang, M. J. & Oyang, Y. J., 2006 Jul 1, In : Nucleic acids research. 34, WEB. SERV. ISS., p. W303-W309

Research output: Contribution to journalArticle

15 Citations (Scopus)
2005

MEDock: A web server for efficient prediction of ligand binding sites based on a novel optimization algorithm

Chang, D. T. H., Oyang, Y. J. & Lin, J. H., 2005 Jul 1, In : Nucleic acids research. 33, SUPPL. 2, p. W233-W238

Research output: Contribution to journalArticle

80 Citations (Scopus)
2004

ProteMiner-SSM: A web server for efficient analysis of similar protein tertiary substructures

Chang, D. T. H., Chen, C. Y., Chung, W. C., Oyang, Y. J., Juan, H. F. & Huang, H. C., 2004 Jul 1, In : Nucleic acids research. 32, WEB SERVER ISS., p. W76-W82

Research output: Contribution to journalArticle

18 Citations (Scopus)