• 3362 Citations
  • 30 h-Index
19962019
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Research Output 1996 2019

  • 3362 Citations
  • 30 h-Index
  • 141 Article
  • 3 Review article
  • 2 Comment/debate
  • 1 Editorial
2019

Revegetation on abandoned salt ponds relieves the seasonal fluctuation of soil microbiomes

Tran, H. T., Wang, H. C., Hsu, T. W., Sarkar, R., Huang, C-L. & Chiang, T-Y., 2019 Jun 11, In : BMC genomics. 20, 1, 478.

Research output: Contribution to journalArticle

Open Access
Microbiota
Salt-Tolerant Plants
Soil
Salts
Environmental Biodegradation
2018
2 Citations (Scopus)

Highly diverse endophytes in roots of Cycas bifida (Cycadaceae), an ancient but endangered gymnosperm

Zheng, Y., Chiang, T-Y., Huang, C-L. & Gong, X., 2018 May 1, In : Journal of Microbiology. 56, 5, p. 337-345 9 p.

Research output: Contribution to journalArticle

Cycas
Gymnosperms
Endophytes
Cyanobacteria
Hyphomicrobiaceae
2017
3 Citations (Scopus)

Common stress transcriptome analysis reveals functional and genomic architecture differences between early and delayed response genes

Lin, C. W., Huang, L. Y., Huang, C-L., Wang, Y. C., Lai, P. H., Wang, H-V., Chang, W-C., Chiang, T-Y. & Huang, H-J., 2017 Mar 1, In : Plant and Cell Physiology. 58, 3, p. 546-559 14 p.

Research output: Contribution to journalArticle

Gene Expression Profiling
transcriptomics
genomics
Genes
genes
3 Citations (Scopus)

Comparative phylogeography of two codistributed endemic cyprinids in southeastern Taiwan

Chiang, T-Y., Chen, Y. Y., Lee, T. W., Hsu, K. C., Lin, F. J., Wang, W. K. & Lin, H. D., 2017 Feb 1, In : Biochemical Systematics and Ecology. 70, p. 283-290 8 p.

Research output: Contribution to journalArticle

Phylogeography
cyprinid
phylogeography
Taiwan
Fish
1 Citation (Scopus)

Frequent gene flow blurred taxonomic boundaries of sections in Lilium L. (Liliaceae)

Gong, X., Hung, K. H., Ting, Y. W., Hsu, T. W., Malikova, L., Tran, H. T., Huang, C-L., Liu, S. H. & Chiang, T-Y., 2017 Aug 1, In : PloS one. 12, 8, e0183209.

Research output: Contribution to journalArticle

Liliaceae
Lilium
Gene Flow
Expressed Sequence Tags
gene flow
2016
13 Citations (Scopus)

Comparative transcriptome analysis of Gastrodia elata (Orchidaceae) in response to fungus symbiosis to identify gastrodin biosynthesis-related genes

Tsai, C. C., Wu, K. M., Chiang, T-Y., Huang, C. Y., Chou, C. H., Li, S. J. & Chiang, Y. C., 2016 Mar 9, In : BMC genomics. 17, 1, 212.

Research output: Contribution to journalArticle

Gastrodia
Orchidaceae
Symbiosis
Gene Expression Profiling
Fungi
10 Citations (Scopus)

Cross-Species, amplifiable EST-SSR Markers for amentotaxus species obtained by next-generation sequencing

Li, C. Y., Chiang, T-Y., Chiang, Y. C., Hsu, H. M., Ge, X. J., Huang, C. C., Chen, C. T. & Hung, K. H., 2016 Jan 1, In : Molecules. 21, 1, 21010067.

Research output: Contribution to journalArticle

sequencing
Expressed Sequence Tags
Microsatellite Repeats
markers
endangered species

Multilocus analyses reveal postglacial demographic shrinkage of juniperus morrisonicola (cupressaceae), a dominant alpine species in Taiwan

Huang, C. C., Hsu, T. W., Wang, H-V., Liu, Z. H., Chen, Y. Y., Chiu, C. T., Huang, C-L., Hung, K. H. & Chiang, T-Y., 2016 Aug 1, In : PLoS ONE. 11, 8, e0161713.

Research output: Contribution to journalArticle

Cupressaceae
Juniperus
Climate Change
Taiwan
shrinkage
1 Citation (Scopus)

Opening a new era of "ecological Genetics and Genomics"

Gojobori, T. & Chiang, T-Y., 2016 Feb 1, In : Ecological Genetics and Genomics. 1, 1 p.

Research output: Contribution to journalEditorial

Genomics
genomics
ecological genetics
2 Citations (Scopus)
Biotechnology
Agriculture
Students
Curriculum
Curricula
2015
6 Citations (Scopus)

Alleviation of allelochemical juglone-induced phytotoxicity in tobacco plants by proline

Chen, S. Y., Chi, W. C., Trinh, N. N., Cheng, K. T., Chen, Y. A., Lin, T. C., Lin, Y. C., Huang, L. Y., Huang, H-J. & Chiang, T-Y., 2015 Jan 1, In : Journal of Plant Interactions. 10, 1, p. 167-172 6 p.

Research output: Contribution to journalArticle

juglone
allelochemical
phytotoxicity
allelochemicals
tobacco
7 Citations (Scopus)

Biogeography of the Phalaenopsis amabilis species complex inferred from nuclear and plastid DNAs

Tsai, C. C., Chou, C. H., Wang, H-V., Ko, Y. Z., Chiang, T-Y. & Chiang, Y. C., 2015 Aug 16, In : BMC Plant Biology. 15, 1, 202.

Research output: Contribution to journalArticle

Phalaenopsis
plastid DNA
nuclear genome
biogeography
phylogeny
2 Citations (Scopus)

Complete mitochondrial genome of the amphidromous, red-tailed goby Sicyopterus lagocephalus (Pallas) (Teleostei, Gobiidae)

Chiang, T-Y., Chen, I. S., Lin, H. D., Hsiao, S. T. & Ju, Y. M., 2015 Sep 3, In : Mitochondrial DNA. 26, 5, p. 670-671 2 p.

Research output: Contribution to journalArticle

RNA, Transfer, Pro
RNA, Transfer, Phe
Gene Order
Mitochondrial Genome
Base Composition
1 Citation (Scopus)
Cyanobacteria
Porifera
Genome
Genes
Anthozoa
6 Citations (Scopus)

Ecological genomics in Xanthomonas: The nature of genetic adaptation with homologous recombination and host shifts

Huang, C-L., Pu, P. H., Huang, H-J., Sung, H-M., Liaw, H-J., Chen, Y-M., Chen, C. M., Huang, M. B., Osada, N., Gojobori, T., Pai, T. W., Chen, Y. T., Hwang, C-C. & Chiang, T-Y., 2015 Mar 15, In : BMC genomics. 16, 1, 188.

Research output: Contribution to journalArticle

Xanthomonas
Homologous Recombination
Genomics
Genetic Selection
Genome
9 Citations (Scopus)

Genetic Divergence and Biogeographical Patterns in Amentotaxus argotaenia Species Complex

Ge, X. J., Hung, K. H., Ko, Y. Z., Hsu, T. W., Gong, X., Chiang, T-Y. & Chiang, Y. C., 2015 Mar 4, In : Plant Molecular Biology Reporter. 33, 2, p. 264-280 17 p.

Research output: Contribution to journalArticle

Gene Flow
intergenic DNA
chloroplast DNA
Mitochondrial DNA
Microsatellite Repeats
8 Citations (Scopus)

Highly diversified fungi are associated with the achlorophyllous orchid Gastrodia flavilabella

Liu, T., Li, C. M., Han, Y. L., Chiang, T-Y., Chiang, Y. C. & Sung, H-M., 2015 Mar 14, In : BMC genomics. 16, 1, 185.

Research output: Contribution to journalArticle

Gastrodia
Fungi
Soil
Armillaria
Food
5 Citations (Scopus)

The complete mitochondrial genome sequence of Metzia formosae (Cypriniformes, Cyprinidae)

Lin, H. D., Lin, F. J., Chiang, T-Y. & Lee, T. W., 2015 Apr 1, In : Mitochondrial DNA. 26, 2, p. 257-258 2 p.

Research output: Contribution to journalArticle

Cypriniformes
Cyprinidae
Mitochondrial Genome
Endangered Species
Base Composition
2014
6 Citations (Scopus)

Adaptive divergence with gene flow in incipient speciation of Miscanthus floridulus/sinensis complex (Poaceae)

Huang, C-L., Ho, C. W., Chiang, Y. C., Shigemoto, Y., Hsu, T. W., Hwang, C-C., Ge, X. J., Chen, C., Wu, T. H., Chou, C. H., Huang, H-J., Gojobori, T., Osada, N. & Chiang, T-Y., 2014 Dec 1, In : Plant Journal. 80, 5, p. 834-847 14 p.

Research output: Contribution to journalArticle

Miscanthus floridulus
Gene Flow
adaptive radiation
Poaceae
gene flow
3 Citations (Scopus)

Analysis of microsatellites in the vulnerable orchid gastrodia flavilabella: The development of microsatellite markers, And cross-species amplification in gastrodia

Tsai, C. C., Wu, P. Y., Kuo, C. C., Huang, M. C., Yu, S. K., Hsu, T. W., Chiang, T-Y. & Chiang, Y. C., 2014 Jan 1, In : Botanical Studies. 55, 1, p. 1-9 9 p.

Research output: Contribution to journalArticle

Gastrodia
microsatellite repeats
loci
Oriental traditional medicine
genetic variation
3 Citations (Scopus)

Complete mitochondrial genome of Microphysogobio alticorpus (Cypriniformes, Cyprinidae)

Lin, D. Y., Lin, H. D., Tzeng, S. J. & Chiang, T-Y., 2014 Jan 1, In : Mitochondrial DNA. 25, 3, p. 173-174 2 p.

Research output: Contribution to journalArticle

Cypriniformes
Cyprinidae
Mitochondrial Genome
Base Pairing
RNA, Transfer, Phe
10 Citations (Scopus)
Phalaenopsis
barcoding
mycorrhizal fungi
fungus
rare species
Parapenaeopsis hardwickii
fishery management
disequilibrium
heterozygosity
Microsatellite Repeats

Polymorphic microsatellite loci isolated from Cervus unicolor (Cervidae) show inbreeding in a domesticated population of Taiwan Sambar deer

Lin, D. Y., Chiang, T-Y., Huang, C. C., Lin, H. D., Tzeng, S. J., Kang, S. R., Sung, H-M. & Wu, M. C., 2014 May 23, In : Genetics and Molecular Research. 13, 2, p. 3967-3971 5 p.

Research output: Contribution to journalArticle

Deer
Inbreeding
Taiwan
Microsatellite Repeats
Population Genetics
27 Citations (Scopus)

Taming the wild: Resolving the gene pools of non-model Arabidopsis lineages

Hohmann, N., Schmickl, R., Chiang, T-Y., Lučanová, M., Kolář, F., Marhold, K. & Koch, M. A., 2014 Jan 1, In : BMC Evolutionary Biology. 14, 1, 224.

Research output: Contribution to journalArticle

Arabidopsis
gene
chloroplast
subspecies
nuclear genome
6 Citations (Scopus)

Temperate origin and diversification via southward colonization in Fatsia (Araliaceae), an insular endemic genus of the west pacific Rim

Chiang, T-Y., Chen, S. F., Kato, H., Hwang, C-C., Moore, S. J., Hsu, T. W. & Hung, K. H., 2014 Jan 1, In : Tree Genetics and Genomes. 10, 5, p. 1317-1330 14 p.

Research output: Contribution to journalArticle

Fatsia
Araliaceae
Pacific Rim
Islands
colonization
2013
11 Citations (Scopus)

Characterization of 42 microsatellite markers from poison ivy, Toxicodendron radicans (Anacardiaceae)

Hsu, T. W., Shih, H. C., Kuo, C. C., Chiang, T-Y. & Chiang, Y. C., 2013 Oct 14, In : International journal of molecular sciences. 14, 10, p. 20414-20426 13 p.

Research output: Contribution to journalArticle

Toxicodendron
Dermatitis
Anacardiaceae
Allergens
microsatellites
23 Citations (Scopus)

Complete mitochondrial genome of Sicyopterus japonicus (Perciformes, Gobiidae)

Chiang, T-Y., Chen, I. S., Lin, H. D., Chang, W. B. & Ju, Y. M., 2013 Jun 1, In : Mitochondrial DNA. 24, 3, p. 191-193 3 p.

Research output: Contribution to journalArticle

Perciformes
Mitochondrial Genome
Base Pairing
RNA, Transfer, Pro
RNA, Transfer, Phe
13 Citations (Scopus)

Diverse processes shape deep phylogeographical divergence in Cobitis sinensis (Teleostei: Cobitidae) in East Asia

Chiang, T-Y., Lin, H. D., Zhao, J., Kuo, P. H., Lee, T. W. & Hsu, K. C., 2013 Nov 1, In : Journal of Zoological Systematics and Evolutionary Research. 51, 4, p. 316-326 11 p.

Research output: Contribution to journalArticle

Cypriniformes
Cobitidae
Far East
East Asia
divergence
70 Citations (Scopus)

Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly

Chen, Y. C., Liu, T., Yu, C. H., Chiang, T-Y. & Hwang, C-C., 2013 Apr 29, In : PloS one. 8, 4, e62856.

Research output: Contribution to journalArticle

genome assembly
Genes
Genome
GC Rich Sequence
Base Composition
10 Citations (Scopus)

Population structure and demographic history of Sicyopterus japonicus (Perciformes; Gobiidae) in Taiwan inferred from mitochondrial control region sequences

Ju, Y. M., Hsu, C. H., Fang, L. S., Lin, H. D., Wu, J. H., Han, C. C., Chen, I. S. & Chiang, T-Y., 2013 Sep 27, In : Genetics and Molecular Research. 12, 3, p. 4046-4059 14 p.

Research output: Contribution to journalArticle

Perciformes
Taiwan
Demography
Population Dynamics
Population Density
6 Citations (Scopus)

Volatilized myrcene inhibits growth and activates defense responses in rice roots

Hsiung, Y. C., Chen, Y. A., Chen, S. Y., Chi, W. C., Lee, R-H., Chiang, T-Y. & Huang, H-J., 2013 Aug 1, In : Acta Physiologiae Plantarum. 35, 8, p. 2475-2482 8 p.

Research output: Contribution to journalArticle

myrcene
rice
Growth
Lipoxygenase
Genes
2012
15 Citations (Scopus)

Evolutionary rates of commonly used nuclear and organelle markers of Arabidopsis relatives (Brassicaceae)

Huang, C. C., Hung, K. H., Wang, W. K., Ho, C. W., Huang, C-L., Hsu, T. W., Osada, N., Hwang, C-C. & Chiang, T-Y., 2012 May 10, In : Gene. 499, 1, p. 194-201 8 p.

Research output: Contribution to journalArticle

Brassicaceae
Arabidopsis
Organelles
Genes
Chloroplast Genes
19 Citations (Scopus)

Footprints of natural and artificial selection for photoperiod pathway genes in Oryza

Huang, C-L., Hung, C. Y., Chiang, Y. C., Hwang, C-C., Hsu, T. W., Huang, C. C., Hung, K. H., Tsai, K. C., Wang, K. H., Osada, N., Schaal, B. A. & Chiang, T-Y., 2012 Jun 1, In : Plant Journal. 70, 5, p. 769-782 14 p.

Research output: Contribution to journalArticle

artificial selection
Genetic Selection
Oryza
Photoperiod
heading
3 Citations (Scopus)

Four-component pharmacophore model for endomorphins toward μ opioid receptor subtypes

Wu, Y. C., Jaglinski, T., Hsieh, J. Y., Chiu, J. J., Chiang, T-Y. & Hwang, C-C., 2012 Feb 1, In : Journal of Molecular Modeling. 18, 2, p. 825-834 10 p.

Research output: Contribution to journalArticle

Opioid Receptors
selectivity
simulation
rings
Amides
20 Citations (Scopus)

Inferring Multiple Refugia and Phylogeographical Patterns in Pinus massoniana Based on Nucleotide Sequence Variation and DNA Fingerprinting

Ge, X. J., Hsu, T. W., Hung, K. H., Lin, C. J., Huang, C. C., Huang, C. C., Chiang, Y. C. & Chiang, T-Y., 2012 Aug 29, In : PloS one. 7, 8, e43717.

Research output: Contribution to journalArticle

Pinus massoniana
Pinus
DNA Fingerprinting
DNA fingerprinting
refuge habitats
5 Citations (Scopus)

Isolation and characterization of microsatellite loci from Pinus massoniana (pinaceae)

Hung, K. H., Lin, C. Y., Huang, C. C., Hwang, C-C., Hsu, T. W., Kuo, Y. L., Wang, W. K., Hung, C. Y. & Chiang, T-Y., 2012 Apr 1, In : Botanical Studies. 53, 2, p. 191-196 6 p.

Research output: Contribution to journalArticle

Pinus massoniana
Pinaceae
microsatellite repeats
loci
Taiwan
3 Citations (Scopus)

Isolation and characterization of polymorphic microsatellite loci from metapenaeopsis barbata using PCR-based isolation of microsatellite arrays (PIMA)

Chiang, T-Y., Tzeng, T. D., Lin, H. D., Cho, C. J. & Lin, F. J., 2012 Mar 1, In : International journal of molecular sciences. 13, 3, p. 2763-2768 6 p.

Research output: Contribution to journalArticle

microsatellites
loci
Microsatellite Repeats
Conservation
isolation
2011
4 Citations (Scopus)

A molecular dynamics study on opioid activities of biphalin molecule

Hsieh, J. Y., Chiang, T-Y., Chen, J. L., Chen, Y. W., Lin, H. C. & Hwang, C-C., 2011 Oct 1, In : Journal of Molecular Modeling. 17, 10, p. 2455-2464 10 p.

Research output: Contribution to journalArticle

Torsional stress
Opioid Analgesics
Conformations
Molecular dynamics
Thermodynamic properties
13 Citations (Scopus)

Characterization of Expressed Sequence Tags from Flower Buds of Alpine Lilium formosanum using a Subtractive cDNA Library

Wang, W. K., Liu, C. C., Chiang, T-Y., Chen, M. T., Chou, C. H. & Yeh, C. H., 2011 Jan 1, In : Plant Molecular Biology Reporter. 29, 1, p. 88-97 10 p.

Research output: Contribution to journalArticle

Lilium formosanum
Lilium
Expressed Sequence Tags
expressed sequence tags
Gene Library
34 Citations (Scopus)

Conservation genetics and phylogeography of endangered and endemic shrub Tetraena mongolica (Zygophyllaceae) in Inner Mongolia, China

Ge, X. J., Hwang, C-C., Liu, Z. H., Huang, C. C., Huang, W. H., Hung, K. H., Wang, W. K. & Chiang, T-Y., 2011 Jan 4, In : BMC Genetics. 12, 1.

Research output: Contribution to journalArticle

Zygophyllaceae
Phylogeography
China
Population
Seed Dispersal
15 Citations (Scopus)

Development of 12 genic microsatellite loci for a biofuel grass, Miscanthus sinensis (Poaceae)

Ho, C. W., Wu, T. H., Hsu, T. W., Huang, J. C., Huang, C. C. & Chiang, T-Y., 2011 Aug 1, In : American Journal of Botany. 98, 8

Research output: Contribution to journalArticle

Miscanthus sinensis
Biofuels
Poaceae
biofuels
biofuel
11 Citations (Scopus)

Genetic population structure of the alpine species Rhododendron pseudochrysanthum sensu lato (Ericaceae) inferred from chloroplast and nuclear DNA

Huang, C. C., Hung, K. H., Hwang, C-C., Huang, J. C., Lin, H. D., Wang, W. K., Wu, P. Y., Hsu, T. W. & Chiang, T-Y., 2011 May 26, In : BMC Evolutionary Biology. 11, 1, 108.

Research output: Contribution to journalArticle

Ericaceae
Rhododendron
chloroplast DNA
chloroplast
nuclear genome
11 Citations (Scopus)

Population structure in the endangered cyprinid fish pararasbora moltrechti in taiwan, based on mitochondrial and microsatellite DNAs

Chiang, T-Y., Lee, T. W., Hsu, K. C., Kuo, C. H., Lin, D. Y. & Lin, H. D., 2011 Sep 1, In : Zoological Science. 28, 9, p. 642-651 10 p.

Research output: Contribution to journalArticle

Taiwan
population structure
mitochondrial DNA
microsatellite repeats
DNA
19 Citations (Scopus)

Population structure of Nouelia insignis (Asteraceae), an endangered species in southwestern China, based on chloroplast DNA sequences: Recent demographic shrinking

Gong, X., Luan, S. S., Hung, K. H., Hwang, C-C., Lin, C. J., Chiang, Y. C. & Chiang, T-Y., 2011 Jan 1, In : Journal of Plant Research. 124, 2, p. 221-230 10 p.

Research output: Contribution to journalArticle

chloroplast DNA
endangered species
Asteraceae
haplotypes
population structure
9 Citations (Scopus)

Ypsilandra (Melanthiaceae; Liliaceae sensu lato), a new generic record for Taiwan

Hsu, T. W., Kono, Y., Chiang, T-Y. & Peng, C. I., 2011 Jan 1, In : Botanical Studies. 52, 1, p. 99-104 6 p.

Research output: Contribution to journalArticle

Melanthiaceae
Liliaceae
Taiwan
China
karyotyping
2010
17 Citations (Scopus)

Multilocus analysis of genetic divergence between outcrossing Arabidopsis species: Evidence of genome-wide admixture

Wang, W. K., Ho, C. W., Hung, K. H., Wang, K. H., Huang, C. C., Araki, H., Hwang, C-C., Hsu, T. W., Osada, N. & Chiang, T-Y., 2010 Oct 1, In : New Phytologist. 188, 2, p. 488-500 13 p.

Research output: Contribution to journalArticle

outcrossing
Arabidopsis
Genome
genetic variation
genome
25 Citations (Scopus)

Multiple factors have shaped the phylogeography of Chinese spiny loach Cobitis sinensis in Taiwan as inferred from mitochondrial DNA variation

Chiang, T-Y., Lin, H. D., Shao, K. T. & Hsu, K. C., 2010 Apr 1, In : Journal of Fish Biology. 76, 5, p. 1173-1189 17 p.

Research output: Contribution to journalArticle

Cobitidae
phylogeography
mitochondrial DNA
Taiwan
river
8 Citations (Scopus)

Phylogeography of Hemibarbus labeo (Cyprinidae): Secondary contact of ancient lineages of mtDNA

Wang, J. P., Lin, C. J., Lin, H. D., Chao, S-C. & Chiang, T-Y., 2010 Jan 1, In : Zoologica Scripta. 39, 1, p. 23-35 13 p.

Research output: Contribution to journalArticle

Phylogeography
Cyprinidae
secondary contact
geographical region
phylogeography
12 Citations (Scopus)

Population history in Arabidopsis halleri using multilocus analysis

Heidel, A. J., Ramos-Onsins, S. E., Wang, W. K., Chiang, T-Y. & Mitchell-Olds, T., 2010 Aug 1, In : Molecular Ecology. 19, 16, p. 3364-3379 16 p.

Research output: Contribution to journalArticle

Arabidopsis
history
Population
Human Activities
human activity