• 1432 Citations
  • 22 h-Index
20042020

Research output per year

If you made any changes in Pure these will be visible here soon.

Research Output

2020

Chromosome-scale assembly of the Kandelia obovata genome

Hu, M. J., Sun, W. H., Tsai, W. C., Xiang, S., Lai, X. K., Chen, D. Q., Liu, X. D., Wang, Y. F., Le, Y. X., Chen, S. M., Zhang, D. Y., Yu, X., Hu, W. Q., Zhou, Z., Chen, Y. Q., Zou, S. Q. & Liu, Z. J., 2020 Dec 1, In : Horticulture Research. 7, 1, 75.

Research output: Contribution to journalArticle

Open Access

Comparative transcriptomics provides insight into floral color polymorphism in a pleione limprichtii orchid population

Zhang, Y., Zhou, T., Dai, Z., Dai, X., Li, W., Cao, M., Li, C., Tsai, W. C., Wu, X., Zhai, J., Liu, Z. & Wu, S., 2020 Jan 1, In : International journal of molecular sciences. 21, 1, 247.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Expression regulation of MALATE SYNTHASE involved in glyoxylate cycle during protocorm development in Phalaenopsis aphrodite (Orchidaceae)

Wu, W. L., Hsiao, Y. Y., Lu, H. C., Liang, C. K., Fu, C. H., Huang, T. H., Chuang, M. H., Chen, L. J., Liu, Z. J. & Tsai, W. C., 2020 Dec 1, In : Scientific reports. 10, 1, 10123.

Research output: Contribution to journalArticle

Open Access

New insight into the molecular mechanism of colour differentiation among floral segments in orchids

Li, B. J., Zheng, B. Q., Wang, J. Y., Tsai, W. C., Lu, H. C., Zou, L. H., Wan, X., Zhang, D. Y., Qiao, H. J., Liu, Z. J. & Wang, Y., 2020 Dec 1, In : Communications Biology. 3, 1, 89.

Research output: Contribution to journalArticle

Open Access

The genome sequence of star fruit (Averrhoa carambola)

Wu, S., Sun, W., Xu, Z., Zhai, J., Li, X., Li, C., Zhang, D., Wu, X., Shen, L., Chen, J., Ren, H., Dai, X., Dai, Z., Zhao, Y., Chen, L., Cao, M., Xie, X., Liu, X., Peng, D., Dong, J. & 5 others, Hsiao, Y. Y., Chen, S. L., Tsai, W. C., Lan, S. & Liu, Z. J., 2020 Dec 1, In : Horticulture Research. 7, 1, 95.

Research output: Contribution to journalArticle

Open Access

The Litsea genome and the evolution of the laurel family

Chen, Y. C., Li, Z., Zhao, Y. X., Gao, M., Wang, J. Y., Liu, K. W., Wang, X., Wu, L. W., Jiao, Y. L., Xu, Z. L., He, W. G., Zhang, Q. Y., Liang, C. K., Hsiao, Y. Y., Zhang, D. Y., Lan, S. R., Huang, L., Xu, W., Tsai, W. C., Liu, Z. J. & 2 others, Van de Peer, Y. & Wang, Y. D., 2020 Apr 3, In : Nature communications. 11, 1, 1 p.

Research output: Contribution to journalArticle

Open Access
2019

Multivariate analysis reveals phenotypic diversity of Euscaphis japonica population

Sun, W., Yuan, X., Liu, Z. J., Lan, S., Tsai, W. C. & Zou, S. Q., 2019 Jan 1, In : PloS one. 14, 7, e0219046.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

New insights into the symbiotic relationship between orchids and fungi

Yeh, C. M., Chung, K. M., Liang, C. K. & Tsai, W. C., 2019 Feb 11, In : Applied Sciences (Switzerland). 9, 3, 585.

Research output: Contribution to journalReview article

Open Access
1 Citation (Scopus)

PePIF1, a P-lineage of PIF-like transposable element identified in protocorm-like bodies of Phalaenopsis orchids

Hsu, C. C., Lai, P. H., Chen, T. C., Tsai, W. C., Hsu, J. L., Hsiao, Y. Y., Wu, W. L., Tsai, C. H., Chen, W. H. & Chen, H. H., 2019 Jan 9, In : BMC genomics. 20, 1, 25.

Research output: Contribution to journalArticle

1 Citation (Scopus)

RNA sequencing analysis of Cymbidium goeringii identifies floral scent biosynthesis related genes

Ramya, M., Park, P. H., Chuang, Y. C., Kwon, O. K., An, H. R., Park, P. M., Baek, Y. S., Kang, B. C., Tsai, W. C. & Chen, H. H., 2019 Aug 2, In : BMC Plant Biology. 19, 1, 337.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)
2018

A dual repeat cis-element determines expression of GERANYL DIPHOSPHATE SYNTHASE for monoterpene production in phalaenopsis orchids

Chuang, Y. C., Hung, Y. C., Hsu, C. Y., Yeh, C. M., Mitsuda, N., Ohme-Takagi, M., Tsai, W. C., Chen, W. H. & Chen, H. H., 2018 Jun 5, In : Frontiers in Plant Science. 9, 765.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Advanced applications of next-generation sequencing technologies to orchid biology

Yeh, C. M., Liu, Z. J. & Tsai, W. C., 2018 Jan 1, In : Current issues in molecular biology. 27, p. 51-69 19 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

PbbHLH4 regulates floral monoterpene biosynthesis in Phalaenopsis orchids

Chuang, Y. C., Hung, Y. C., Tsai, W. C., Chen, W. H. & Chen, H. H., 2018 Jan 1, In : Journal of experimental botany. 69, 18, p. 4363-4377 15 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2017

Flower development of Phalaenopsis orchids involves functionally divergent B-class and E-class MADS-box genes

Pan, Z. J., Tsai, W. C. & Chen, H. H., 2017 Jan 25, Orchid biotechnology III. World Scientific Publishing Co. Pte Ltd, p. 251-288 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Post genomics era for orchid research

Tsai, W. C., Dievart, A., Hsu, C. C., Hsiao, Y. Y., Chiou, S. Y., Huang, H. & Chen, H. H., 2017 Dec 1, In : Botanical Studies. 58, 1, 61.

Research output: Contribution to journalReview article

11 Citations (Scopus)

The Apostasia genome and the evolution of orchids

Zhang, G. Q., Liu, K. W., Li, Z., Lohaus, R., Hsiao, Y. Y., Niu, S. C., Wang, J. Y., Lin, Y. C., Xu, Q., Chen, L. J., Yoshida, K., Fujiwara, S., Wang, Z. W., Zhang, Y. Q., Mitsuda, N., Wang, M., Liu, G. H., Pecoraro, L., Huang, H. X., Xiao, X. J. & 15 others, Lin, M., Wu, X. Y., Wu, W. L., Chen, Y. Y., Chang, S. B., Sakamoto, S., Ohme-Takagi, M., Yagi, M., Zeng, S. J., Shen, C. Y., Yeh, C. M., Luo, Y. B., Tsai, W. C., Van De Peer, Y. & Liu, Z. J., 2017 Sep 21, In : Nature. 549, 7672, p. 379-383 5 p.

Research output: Contribution to journalArticle

68 Citations (Scopus)

The function of C/D-class MADS box genes in orchid gynostemium and ovule development

Chen, Y. Y. & Tsai, W. C., 2017 Jan 25, Orchid biotechnology III. World Scientific Publishing Co. Pte Ltd, p. 289-308 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)
2016

De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris

Niu, S. C., Xu, Q., Zhang, G. Q., Zhang, Y. Q., Tsai, W. C., Hsu, J. L., Liang, C. K., Luo, Y. B. & Liu, Z. J., 2016 Sep 27, In : Scientific Data. 3, 201683.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Genome-wide identification and characterization of TCP genes involved in ovule development of Phalaenopsis equestris

Lin, Y. F., Chen, Y. Y., Hsiao, Y. Y., Shen, C. Y., Hsu, J. L., Yeh, C. M., Mitsuda, N., Ohme-Takagi, M., Liu, Z. J. & Tsai, W. C., 2016 Sep 1, In : Journal of experimental botany. 67, 17, p. 5051-5066 16 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Proteomic insights into floral biology

Li, X., Jackson, A., Xie, M., Wu, D., Tsai, W. C. & Zhang, S., 2016 Aug 1, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1864, 8, p. 1050-1060 11 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution

Zhang, G. Q., Xu, Q., Bian, C., Tsai, W. C., Yeh, C. M., Liu, K. W., Yoshida, K., Zhang, L. S., Chang, S. B., Chen, F., Shi, Y., Su, Y. Y., Zhang, Y. Q., Chen, L. J., Yin, Y., Lin, M., Huang, H., Deng, H., Wang, Z. W., Zhu, S. L. & 16 others, Zhao, X., Deng, C., Niu, S. C., Huang, J., Wang, M., Liu, G. H., Yang, H. J., Xiao, X. J., Hsiao, Y. Y., Wu, W. L., Chen, Y. Y., Mitsuda, N., Ohme-Takagi, M., Luo, Y. B., Van De Peer, Y. & Liu, Z. J., 2016 Jan 12, In : Scientific reports. 6, 19029.

Research output: Contribution to journalArticle

72 Citations (Scopus)
2015

Erratum: The genome sequence of the orchid Phalaenopsis equestris (Nature Genetics (2015) 47 (65-72))

Cai, J., Liu, X., Vanneste, K., Proost, S., Tsai, W. C., Liu, K. W., Chen, L. J., He, Y., Xu, Q., Bian, C., Zheng, Z., Sun, F., Liu, W., Hsiao, Y. Y., Pan, Z. J., Hsu, C. C., Yang, Y. P., Hsu, Y. C., Chuang, Y. C., Dievart, A. & 17 others, Dufayard, J. F., Xu, X., Wang, J. Y., Xiao, X. J., Zhao, X. M., Du, R., Zhang, G. Q., Wang, M., Su, Y. Y., Xie, G. C., Liu, G. H., Li, L. Q., Huang, L. Q., Luo, Y. B., Chen, H. H., Van De Peer, Y. & Liu, Z. J., 2015 Jan 1, In : Nature Genetics. 47, 2, 1 p.

Research output: Contribution to journalComment/debate

2 Citations (Scopus)

Erratum: The genome sequence of the orchid Phalaenopsis equestris (Nat. Genet.(2015) 47: (65-72))

Cai, J., Liu, X., Vanneste, K., Proost, S., Tsai, W. C., Liu, K. W., Chen, L. J., He, Y., Xu, Q., Bian, C., Zheng, Z., Sun, F., Liu, W., Hsiao, Y. Y., Pan, Z. J., Hsu, C. C., Yang, Y. P., Hsu, Y. C., Chuang, Y. C., Dievart, A. & 18 others, Dufayard, J. F., Xu, X., Wang, J. Y., Wang, J., Xiao, X. J., Zhao, X. M., Du, R., Zhang, G. Q., Wang, M., Su, Y. Y., Xie, G. C., Liu, G. H., Li, L. Q., Huang, L. Q., Luo, Y. B., Chen, H. H., Van De Peer, Y. & Liu, Z. J., 2015 Feb 25, In : Nature Genetics. 47, 3, 1 p.

Research output: Contribution to journalComment/debate

3 Citations (Scopus)

Three R2R3-MYB transcription factors regulate distinct floral pigmentation patterning in Phalaenopsis spp

Hsu, C. C., Chen, Y. Y., Tsai, W. C., Chen, W. H. & Chen, H. H., 2015 Jan 1, In : Plant Physiology. 168, 1, p. 175-191 17 p.

Research output: Contribution to journalArticle

60 Citations (Scopus)
2014

Evolution and function of MADS-box genes involved in orchid floral development

Tsai, W. C., Pan, Z. J., Hsiao, Y. Y., Chen, L. J. & Liu, Z. J., 2014 Jan 1, In : Journal of Systematics and Evolution. 52, 4, p. 397-410 14 p.

Research output: Contribution to journalReview article

10 Citations (Scopus)

Flower development of Phalaenopsis orchid involves functionally divergent SEPALLATA-like genes

Pan, Z. J., Chen, Y. Y., Du, J. S., Chen, Y. Y., Chung, M. C., Tsai, W-C., Wang, C. N. & Chen, H-H., 2014 Jan 1, In : New Phytologist. 202, 3, p. 1024-1042 19 p.

Research output: Contribution to journalArticle

52 Citations (Scopus)

Histone acetylation accompanied with promoter sequences displaying differential expression profiles of B-Class MADS-box genes for Phalaenopsis floral morphogenesis

Hsu, C. C., Wu, P. S., Chen, T. C., Yu, C. W., Tsai, W-C., Wu, K., Wu, W-L., Chen, W. H. & Chen, H-H., 2014 Dec 11, In : PloS one. 9, 12, e106033.

Research output: Contribution to journalArticle

8 Citations (Scopus)

New insight into the regulation of floral morphogenesis

Tsai, W. C., Pan, Z. J., Su, Y. Y. & Liu, Z. J., 2014, International Review of Cell and Molecular Biology. Elsevier Inc., p. 157-182 26 p. (International Review of Cell and Molecular Biology; vol. 311).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)
2013

A New Molecular Phylogeny and a New Genus, Pendulorchis, of the Aerides-Vanda Alliance (Orchidaceae: Epidendroideae)

Zhang, G. Q., Liu, K. W., Chen, L. J., Xiao, X. J., Zhai, J. W., Li, L. Q., Cai, J., Hsiao, Y. Y., Rao, W. H., Huang, J., Ma, X. Y., Chung, S. W., Huang, L. Q., Tsai, W. C. & Liu, Z. J., 2013 Apr 5, In : PloS one. 8, 4, e60097.

Research output: Contribution to journalArticle

32 Citations (Scopus)

A New Orchid Genus, Danxiaorchis, and Phylogenetic Analysis of the Tribe Calypsoeae

Zhai, J. W., Zhang, G. Q., Chen, L. J., Xiao, X. J., Liu, K. W., Tsai, W. C., Hsiao, Y. Y., Tian, H. Z., Zhu, J. Q., Wang, M. N., Wang, F. G., Xing, F. W. & Liu, Z. J., 2013 Apr 4, In : PloS one. 8, 4, e60371.

Research output: Contribution to journalArticle

21 Citations (Scopus)

OrchidBase 2.0: Comprehensive collection of orchidaceae floral transcriptomes

Tsai, W. C., Fu, C. H., Hsiao, Y. Y., Huang, Y. M., Chen, L. J., Wang, M., Liu, Z. J. & Chen, H. H., 2013 Feb 1, In : Plant and Cell Physiology. 54, 2, p. e7

Research output: Contribution to journalArticle

46 Citations (Scopus)

Transcriptomic analysis of floral organs from Phalaenopsis orchid by using oligonucleotide microarray

Hsiao, Y. Y., Huang, T. H., Fu, C. H., Huang, S. C., Chen, Y. J., Huang, Y. M., Chen, W. H., Tsai, W. C. & Chen, H. H., 2013 Apr 10, In : Gene. 518, 1, p. 91-100 10 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2012

C-and D-class MADS-box genes from phalaenopsis equestris (orchidaceae) display functions in gynostemium and ovule development

Chen, Y. Y., Lee, P. F., Hsiao, Y. Y., Wu, W. L., Pan, Z. J., Lee, Y. I., Liu, K. W., Chen, L. J., Liu, Z. J. & Tsai, W. C., 2012 Jun 1, In : Plant and Cell Physiology. 53, 6, p. 1053-1067 15 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Predicted disappearance of Cephalantheropsis obcordata in luofu mountain due to changes in rainfall patterns

Xiao, X. J., Liu, K. W., Zheng, Y. Y., Zhang, Y. T., Tsai, W. C., Hsiao, Y. Y., Zhang, G. Q., Chen, L. J. & Liu, Z. J., 2012 Jan 10, In : PloS one. 7, 1, e29718.

Research output: Contribution to journalArticle

3 Citations (Scopus)

The Anther steps onto the Stigma for self-fertilization in a slipper orchid

Chen, L. J., Liu, K. W., Xiao, X. J., Tsai, W. C., Hsiao, Y. Y., Huang, J. & Liu, Z. J., 2012 May 23, In : PloS one. 7, 5, e37478.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2011

An overview of the Phalaenopsis orchid genome through BAC end sequence analysis

Hsu, C. C., Chung, Y. L., Chen, T. C., Lee, Y. L., Kuo, Y. T., Tsai, W. C., Hsiao, Y. Y., Chen, Y. W., Wu, W. L. & Chen, H. H., 2011 Jan 6, In : BMC Plant Biology. 11, 3.

Research output: Contribution to journalArticle

40 Citations (Scopus)

Biosynthetic regulation of floral scent in phalaenopsis

Hsiao, Y. Y., Tsai, W. C., Che, W. H. & Chen, H. H., 2011 Jan 1, Orchid Biotechnology II. World Scientific Publishing Co., p. 145-180 36 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Duplicated C-Class MADS-Box genes reveal distinct roles in gynostemium development in cymbidium ensifolium (Orchidaceae)

Wang, S. Y., Lee, P. F., Lee, Y. I., Hsiao, Y. Y., Chen, Y. Y., Pan, Z. J., Liu, Z. J. & Tsai, W. C., 2011 Mar 1, In : Plant and Cell Physiology. 52, 3, p. 563-577 15 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Gene discovery using next-generation pyrosequencing to develop ESTs for Phalaenopsis orchids

Hsiao, Y. Y., Chen, Y. W., Huang, S. C., Pan, Z. J., Fu, C. H., Chen, W. H., Tsai, W. C. & Chen, H. H., 2011 Apr 12, In : BMC genomics. 12, 360.

Research output: Contribution to journalArticle

42 Citations (Scopus)

OrchidBase: A collection of sequences of the transcriptome derived from orchids

Fu, C. H., Chen, Y. W., Hsiao, Y. Y., Pan, Z. J., Liu, Z. J., Huang, Y. M., Tsai, W. C. & Chen, H. H., 2011 Feb 1, In : Plant and Cell Physiology. 52, 2, p. 238-243 6 p.

Research output: Contribution to journalArticle

61 Citations (Scopus)

Paraholcoglossum and Tsiorchis, two new orchid genera established by molecular and morphological analyses of the Holcoglossum alliance

Liu, Z. J., Chen, L. J., Chen, S. C., Cai, J., Tsai, W. C., Hsiao, Y. Y., Rao, W. H., Ma, X. Y. & Zhang, G. Q., 2011 Oct 10, In : PloS one. 6, 10, e24864.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Research on orchid biology and biotechnology

Hsiao, Y. Y., Pan, Z. J., Hsu, C. C., Yang, Y. P., Hsu, Y. C., Chuang, Y. C., Shih, H. H., Chen, W. H., Tsai, W. C. & Chen, H. H., 2011 Sep 1, In : Plant and Cell Physiology. 52, 9, p. 1467-1486 20 p.

Research output: Contribution to journalReview article

54 Citations (Scopus)

The duplicated B-class MADS-box genes display dualistic characters in orchid floral organ identity and growth

Pan, Z. J., Cheng, C. C., Tsai, W. C., Chung, M. C., Chen, W. H., Hu, J. M. & Chen, H. H., 2011 Sep 1, In : Plant and Cell Physiology. 52, 9, p. 1515-1531 17 p.

Research output: Contribution to journalArticle

50 Citations (Scopus)

The relationship between ethylene and orchid ovule development

Tsai, W. C., Hsiao, Y. Y., Pan, Z. J., Chen, Y. W. & Chen, H. H., 2011 Jan 1, Orchid Biotechnology II. World Scientific Publishing Co., p. 229-251 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2010

A novel functional geranyl diphosphate synthase for scent production in phalaenopsis bellina flowers

Hsiao, Y. Y., Tsai, W. C., Chen, H. H. & Chen, W. H., 2010 Oct 29, I International Orchid Symposium. p. 481-488 8 p. (Acta Horticulturae; vol. 878).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Molecular mechanisms underlying orchid floral morphogenesis

Tsai, W. C., Hsiao, Y. Y., Pan, Z. J. & Chen, H. H., 2010 Oct 29, I International Orchid Symposium. p. 115-124 10 p. (Acta Horticulturae; vol. 878).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)
2008

A novel homodimeric geranyl diphosphate synthase from the orchid Phalaenopsis bellina lacking a DD(X)2-4D motif

Hsiao, Y. Y., Jeng, M. F., Tsai, W. C., Chuang, Y. C., Li, C. Y., Wu, T-S., Kuoh, C. S., Chen, W. H. & Chen, H. H., 2008 Sep 1, In : Plant Journal. 55, 5, p. 719-733 15 p.

Research output: Contribution to journalArticle

58 Citations (Scopus)

Chapter 3 Molecular Biology of Orchid Flowers. With Emphasis on Phalaenopsis

Tsai, W. C., Hsiao, Y. Y., Pan, Z. J., Hsu, C. C., Yang, Y. P., Chen, W. H. & Chen, H. H., 2008 Aug 12, Incorporating Advances in Plant Pathology. Kader, J-C. & Delseny, M. (eds.). p. 99-145 47 p. (Advances in Botanical Research; vol. 47).

Research output: Chapter in Book/Report/Conference proceedingChapter

18 Citations (Scopus)

Differential gene expression analysis by cDNA-AFLP between flower buds of Phalaenopsis Hsiang Fei cv. H. F. and its somaclonal variant

Hsu, T. W., Tsai, W. C., Wang, D. P., Lin, S., Hsiao, Y. Y., Chen, W. H. & Chen, H. H., 2008 Sep 1, In : Plant Science. 175, 3, p. 415-422 8 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)