• 1432 Citations
  • 22 h-Index
20042020

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2020

Chromosome-scale assembly of the Kandelia obovata genome

Hu, M. J., Sun, W. H., Tsai, W. C., Xiang, S., Lai, X. K., Chen, D. Q., Liu, X. D., Wang, Y. F., Le, Y. X., Chen, S. M., Zhang, D. Y., Yu, X., Hu, W. Q., Zhou, Z., Chen, Y. Q., Zou, S. Q. & Liu, Z. J., 2020 Dec 1, In : Horticulture Research. 7, 1, 75.

Research output: Contribution to journalArticle

Open Access

Comparative transcriptomics provides insight into floral color polymorphism in a pleione limprichtii orchid population

Zhang, Y., Zhou, T., Dai, Z., Dai, X., Li, W., Cao, M., Li, C., Tsai, W. C., Wu, X., Zhai, J., Liu, Z. & Wu, S., 2020 Jan 1, In : International journal of molecular sciences. 21, 1, 247.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

New insight into the molecular mechanism of colour differentiation among floral segments in orchids

Li, B. J., Zheng, B. Q., Wang, J. Y., Tsai, W. C., Lu, H. C., Zou, L. H., Wan, X., Zhang, D. Y., Qiao, H. J., Liu, Z. J. & Wang, Y., 2020 Dec 1, In : Communications Biology. 3, 1, 89.

Research output: Contribution to journalArticle

Open Access

The genome sequence of star fruit (Averrhoa carambola)

Wu, S., Sun, W., Xu, Z., Zhai, J., Li, X., Li, C., Zhang, D., Wu, X., Shen, L., Chen, J., Ren, H., Dai, X., Dai, Z., Zhao, Y., Chen, L., Cao, M., Xie, X., Liu, X., Peng, D., Dong, J. & 5 others, Hsiao, Y. Y., Chen, S. L., Tsai, W. C., Lan, S. & Liu, Z. J., 2020 Dec 1, In : Horticulture Research. 7, 1, 95.

Research output: Contribution to journalArticle

Open Access

The Litsea genome and the evolution of the laurel family

Chen, Y. C., Li, Z., Zhao, Y. X., Gao, M., Wang, J. Y., Liu, K. W., Wang, X., Wu, L. W., Jiao, Y. L., Xu, Z. L., He, W. G., Zhang, Q. Y., Liang, C. K., Hsiao, Y. Y., Zhang, D. Y., Lan, S. R., Huang, L., Xu, W., Tsai, W. C., Liu, Z. J. & 2 others, Van de Peer, Y. & Wang, Y. D., 2020 Apr 3, In : Nature communications. 11, 1, 1 p.

Research output: Contribution to journalArticle

Open Access
2019

Multivariate analysis reveals phenotypic diversity of Euscaphis japonica population

Sun, W., Yuan, X., Liu, Z. J., Lan, S., Tsai, W. C. & Zou, S. Q., 2019 Jan 1, In : PloS one. 14, 7, e0219046.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

PePIF1, a P-lineage of PIF-like transposable element identified in protocorm-like bodies of Phalaenopsis orchids

Hsu, C. C., Lai, P. H., Chen, T. C., Tsai, W. C., Hsu, J. L., Hsiao, Y. Y., Wu, W. L., Tsai, C. H., Chen, W. H. & Chen, H. H., 2019 Jan 9, In : BMC genomics. 20, 1, 25.

Research output: Contribution to journalArticle

1 Citation (Scopus)

RNA sequencing analysis of Cymbidium goeringii identifies floral scent biosynthesis related genes

Ramya, M., Park, P. H., Chuang, Y. C., Kwon, O. K., An, H. R., Park, P. M., Baek, Y. S., Kang, B. C., Tsai, W. C. & Chen, H. H., 2019 Aug 2, In : BMC Plant Biology. 19, 1, 337.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)
2018

A dual repeat cis-element determines expression of GERANYL DIPHOSPHATE SYNTHASE for monoterpene production in phalaenopsis orchids

Chuang, Y. C., Hung, Y. C., Hsu, C. Y., Yeh, C. M., Mitsuda, N., Ohme-Takagi, M., Tsai, W. C., Chen, W. H. & Chen, H. H., 2018 Jun 5, In : Frontiers in Plant Science. 9, 765.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Advanced applications of next-generation sequencing technologies to orchid biology

Yeh, C. M., Liu, Z. J. & Tsai, W. C., 2018 Jan 1, In : Current issues in molecular biology. 27, p. 51-69 19 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

PbbHLH4 regulates floral monoterpene biosynthesis in Phalaenopsis orchids

Chuang, Y. C., Hung, Y. C., Tsai, W. C., Chen, W. H. & Chen, H. H., 2018 Jan 1, In : Journal of experimental botany. 69, 18, p. 4363-4377 15 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2017

The Apostasia genome and the evolution of orchids

Zhang, G. Q., Liu, K. W., Li, Z., Lohaus, R., Hsiao, Y. Y., Niu, S. C., Wang, J. Y., Lin, Y. C., Xu, Q., Chen, L. J., Yoshida, K., Fujiwara, S., Wang, Z. W., Zhang, Y. Q., Mitsuda, N., Wang, M., Liu, G. H., Pecoraro, L., Huang, H. X., Xiao, X. J. & 15 others, Lin, M., Wu, X. Y., Wu, W. L., Chen, Y. Y., Chang, S. B., Sakamoto, S., Ohme-Takagi, M., Yagi, M., Zeng, S. J., Shen, C. Y., Yeh, C. M., Luo, Y. B., Tsai, W. C., Van De Peer, Y. & Liu, Z. J., 2017 Sep 21, In : Nature. 549, 7672, p. 379-383 5 p.

Research output: Contribution to journalArticle

68 Citations (Scopus)
2016

De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris

Niu, S. C., Xu, Q., Zhang, G. Q., Zhang, Y. Q., Tsai, W. C., Hsu, J. L., Liang, C. K., Luo, Y. B. & Liu, Z. J., 2016 Sep 27, In : Scientific Data. 3, 201683.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Genome-wide identification and characterization of TCP genes involved in ovule development of Phalaenopsis equestris

Lin, Y. F., Chen, Y. Y., Hsiao, Y. Y., Shen, C. Y., Hsu, J. L., Yeh, C. M., Mitsuda, N., Ohme-Takagi, M., Liu, Z. J. & Tsai, W. C., 2016 Sep 1, In : Journal of experimental botany. 67, 17, p. 5051-5066 16 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Proteomic insights into floral biology

Li, X., Jackson, A., Xie, M., Wu, D., Tsai, W. C. & Zhang, S., 2016 Aug 1, In : Biochimica et Biophysica Acta - Proteins and Proteomics. 1864, 8, p. 1050-1060 11 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

The Dendrobium catenatum Lindl. genome sequence provides insights into polysaccharide synthase, floral development and adaptive evolution

Zhang, G. Q., Xu, Q., Bian, C., Tsai, W. C., Yeh, C. M., Liu, K. W., Yoshida, K., Zhang, L. S., Chang, S. B., Chen, F., Shi, Y., Su, Y. Y., Zhang, Y. Q., Chen, L. J., Yin, Y., Lin, M., Huang, H., Deng, H., Wang, Z. W., Zhu, S. L. & 16 others, Zhao, X., Deng, C., Niu, S. C., Huang, J., Wang, M., Liu, G. H., Yang, H. J., Xiao, X. J., Hsiao, Y. Y., Wu, W. L., Chen, Y. Y., Mitsuda, N., Ohme-Takagi, M., Luo, Y. B., Van De Peer, Y. & Liu, Z. J., 2016 Jan 12, In : Scientific reports. 6, 19029.

Research output: Contribution to journalArticle

72 Citations (Scopus)
2015

Three R2R3-MYB transcription factors regulate distinct floral pigmentation patterning in Phalaenopsis spp

Hsu, C. C., Chen, Y. Y., Tsai, W. C., Chen, W. H. & Chen, H. H., 2015 Jan 1, In : Plant Physiology. 168, 1, p. 175-191 17 p.

Research output: Contribution to journalArticle

60 Citations (Scopus)
2014

Flower development of Phalaenopsis orchid involves functionally divergent SEPALLATA-like genes

Pan, Z. J., Chen, Y. Y., Du, J. S., Chen, Y. Y., Chung, M. C., Tsai, W-C., Wang, C. N. & Chen, H-H., 2014 Jan 1, In : New Phytologist. 202, 3, p. 1024-1042 19 p.

Research output: Contribution to journalArticle

52 Citations (Scopus)

Histone acetylation accompanied with promoter sequences displaying differential expression profiles of B-Class MADS-box genes for Phalaenopsis floral morphogenesis

Hsu, C. C., Wu, P. S., Chen, T. C., Yu, C. W., Tsai, W-C., Wu, K., Wu, W-L., Chen, W. H. & Chen, H-H., 2014 Dec 11, In : PloS one. 9, 12, e106033.

Research output: Contribution to journalArticle

8 Citations (Scopus)
2013

A New Molecular Phylogeny and a New Genus, Pendulorchis, of the Aerides-Vanda Alliance (Orchidaceae: Epidendroideae)

Zhang, G. Q., Liu, K. W., Chen, L. J., Xiao, X. J., Zhai, J. W., Li, L. Q., Cai, J., Hsiao, Y. Y., Rao, W. H., Huang, J., Ma, X. Y., Chung, S. W., Huang, L. Q., Tsai, W. C. & Liu, Z. J., 2013 Apr 5, In : PloS one. 8, 4, e60097.

Research output: Contribution to journalArticle

32 Citations (Scopus)

A New Orchid Genus, Danxiaorchis, and Phylogenetic Analysis of the Tribe Calypsoeae

Zhai, J. W., Zhang, G. Q., Chen, L. J., Xiao, X. J., Liu, K. W., Tsai, W. C., Hsiao, Y. Y., Tian, H. Z., Zhu, J. Q., Wang, M. N., Wang, F. G., Xing, F. W. & Liu, Z. J., 2013 Apr 4, In : PloS one. 8, 4, e60371.

Research output: Contribution to journalArticle

21 Citations (Scopus)

OrchidBase 2.0: Comprehensive collection of orchidaceae floral transcriptomes

Tsai, W. C., Fu, C. H., Hsiao, Y. Y., Huang, Y. M., Chen, L. J., Wang, M., Liu, Z. J. & Chen, H. H., 2013 Feb 1, In : Plant and Cell Physiology. 54, 2, p. e7

Research output: Contribution to journalArticle

46 Citations (Scopus)

Transcriptomic analysis of floral organs from Phalaenopsis orchid by using oligonucleotide microarray

Hsiao, Y. Y., Huang, T. H., Fu, C. H., Huang, S. C., Chen, Y. J., Huang, Y. M., Chen, W. H., Tsai, W. C. & Chen, H. H., 2013 Apr 10, In : Gene. 518, 1, p. 91-100 10 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2012

C-and D-class MADS-box genes from phalaenopsis equestris (orchidaceae) display functions in gynostemium and ovule development

Chen, Y. Y., Lee, P. F., Hsiao, Y. Y., Wu, W. L., Pan, Z. J., Lee, Y. I., Liu, K. W., Chen, L. J., Liu, Z. J. & Tsai, W. C., 2012 Jun 1, In : Plant and Cell Physiology. 53, 6, p. 1053-1067 15 p.

Research output: Contribution to journalArticle

34 Citations (Scopus)

Predicted disappearance of Cephalantheropsis obcordata in luofu mountain due to changes in rainfall patterns

Xiao, X. J., Liu, K. W., Zheng, Y. Y., Zhang, Y. T., Tsai, W. C., Hsiao, Y. Y., Zhang, G. Q., Chen, L. J. & Liu, Z. J., 2012 Jan 10, In : PloS one. 7, 1, e29718.

Research output: Contribution to journalArticle

3 Citations (Scopus)

The Anther steps onto the Stigma for self-fertilization in a slipper orchid

Chen, L. J., Liu, K. W., Xiao, X. J., Tsai, W. C., Hsiao, Y. Y., Huang, J. & Liu, Z. J., 2012 May 23, In : PloS one. 7, 5, e37478.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2011

An overview of the Phalaenopsis orchid genome through BAC end sequence analysis

Hsu, C. C., Chung, Y. L., Chen, T. C., Lee, Y. L., Kuo, Y. T., Tsai, W. C., Hsiao, Y. Y., Chen, Y. W., Wu, W. L. & Chen, H. H., 2011 Jan 6, In : BMC Plant Biology. 11, 3.

Research output: Contribution to journalArticle

40 Citations (Scopus)

Duplicated C-Class MADS-Box genes reveal distinct roles in gynostemium development in cymbidium ensifolium (Orchidaceae)

Wang, S. Y., Lee, P. F., Lee, Y. I., Hsiao, Y. Y., Chen, Y. Y., Pan, Z. J., Liu, Z. J. & Tsai, W. C., 2011 Mar 1, In : Plant and Cell Physiology. 52, 3, p. 563-577 15 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Gene discovery using next-generation pyrosequencing to develop ESTs for Phalaenopsis orchids

Hsiao, Y. Y., Chen, Y. W., Huang, S. C., Pan, Z. J., Fu, C. H., Chen, W. H., Tsai, W. C. & Chen, H. H., 2011 Apr 12, In : BMC genomics. 12, 360.

Research output: Contribution to journalArticle

42 Citations (Scopus)

OrchidBase: A collection of sequences of the transcriptome derived from orchids

Fu, C. H., Chen, Y. W., Hsiao, Y. Y., Pan, Z. J., Liu, Z. J., Huang, Y. M., Tsai, W. C. & Chen, H. H., 2011 Feb 1, In : Plant and Cell Physiology. 52, 2, p. 238-243 6 p.

Research output: Contribution to journalArticle

61 Citations (Scopus)

Paraholcoglossum and Tsiorchis, two new orchid genera established by molecular and morphological analyses of the Holcoglossum alliance

Liu, Z. J., Chen, L. J., Chen, S. C., Cai, J., Tsai, W. C., Hsiao, Y. Y., Rao, W. H., Ma, X. Y. & Zhang, G. Q., 2011 Oct 10, In : PloS one. 6, 10, e24864.

Research output: Contribution to journalArticle

20 Citations (Scopus)

The duplicated B-class MADS-box genes display dualistic characters in orchid floral organ identity and growth

Pan, Z. J., Cheng, C. C., Tsai, W. C., Chung, M. C., Chen, W. H., Hu, J. M. & Chen, H. H., 2011 Sep 1, In : Plant and Cell Physiology. 52, 9, p. 1515-1531 17 p.

Research output: Contribution to journalArticle

50 Citations (Scopus)
2008

A novel homodimeric geranyl diphosphate synthase from the orchid Phalaenopsis bellina lacking a DD(X)2-4D motif

Hsiao, Y. Y., Jeng, M. F., Tsai, W. C., Chuang, Y. C., Li, C. Y., Wu, T-S., Kuoh, C. S., Chen, W. H. & Chen, H. H., 2008 Sep 1, In : Plant Journal. 55, 5, p. 719-733 15 p.

Research output: Contribution to journalArticle

58 Citations (Scopus)

Differential gene expression analysis by cDNA-AFLP between flower buds of Phalaenopsis Hsiang Fei cv. H. F. and its somaclonal variant

Hsu, T. W., Tsai, W. C., Wang, D. P., Lin, S., Hsiao, Y. Y., Chen, W. H. & Chen, H. H., 2008 Sep 1, In : Plant Science. 175, 3, p. 415-422 8 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Interactions of B-class complex proteins involved in tepal development in Phalaenopsis orchid

Tsai, W. C., Pan, Z. J., Hsiao, Y. Y., Jeng, M. F., Wu, T. F., Chen, W. H. & Chen, H. H., 2008 May 1, In : Plant and Cell Physiology. 49, 5, p. 814-824 11 p.

Research output: Contribution to journalArticle

43 Citations (Scopus)

The role of ethylene in orchid ovule development

Tsai, W. C., Hsiao, Y. Y., Pan, Z. J., Kuoh, C. S., Chen, W. H. & Chen, H. H., 2008 Jul 1, In : Plant Science. 175, 1-2, p. 98-105 8 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

蝴蝶蘭花形分子發育之機制

Tsai, W-C., 2008, In : 生活蘭藝.

Research output: Contribution to journalArticle

2007

Strategies for functional validation of genes involved in reproductive stages of orchids

Lu, H. C., Chen, H. H., Tsai, W. C., Chen, W. H., Su, H. J., Chang, D. C. N. & Yeh, H. H., 2007 Feb 1, In : Plant Physiology. 143, 2, p. 558-569 12 p.

Research output: Contribution to journalArticle

73 Citations (Scopus)
2006

AFLP fingerprinting and conversion to sequence-tag site markers for the identification of Oncidium cultivars

Chen, W. H., Tseng, I. C., Tsai, W. C., Chiang, M. S., Chen, Y. H. & Chen, H. H., 2006 Sep, In : Journal of Horticultural Science and Biotechnology. 81, 5, p. 791-796 6 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Comparison of transcripts in Phalaenopsis bellina and Phalaenopsis equestris (Orchidaceae) flowers to deduce monoterpene biosynthesis pathway

Hsiao, Y. Y., Tsai, W. C., Kuoh, C. S., Huang, T. H., Wang, H. C., Wu, T. S., Leu, Y. L., Chen, W. H. & Chen, H. H., 2006 Jul 13, In : BMC Plant Biology. 6, 14.

Research output: Contribution to journalArticle

68 Citations (Scopus)

Expression analysis of the ESTs derived from the flower buds of Phalaenopsis equestris

Tsai, W. C., Hsiao, Y. Y., Lee, S. H., Tung, C. W., Wang, D. P., Wang, H. C., Chen, W. H. & Chen, H. H., 2006 Mar 1, In : Plant Science. 170, 3, p. 426-432 7 p.

Research output: Contribution to journalArticle

41 Citations (Scopus)
2005

KSPF: Using gene sequence patterns and data mining for biological knowledge management

Wang, H. C., Kuo, H. C., Chen, H. H., Hsiao, Y. Y. & Tsai, W. C., 2005 Apr, In : Expert Systems With Applications. 28, 3, p. 537-545 9 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

PeMADS6, a GLOBOSA/PISTILLATA-like gene in Phalaenopsis equestris involved in petaloid formation, and correlated with flower longevity and ovary development

Tsai, W. C., Lee, P. F., Chen, H. I., Hsiao, Y. Y., Wei, W. J., Pan, Z. J., Chuang, M. H., Kuoh, C. S., Chen, W. H. & Chen, H. H., 2005 Jul 1, In : Plant and Cell Physiology. 46, 7, p. 1125-1139 15 p.

Research output: Contribution to journalArticle

107 Citations (Scopus)
2004

Four DEF-like MADS box genes displayed distinct floral morphogenetic roles in Phalaenopsis orchid

Tsai, W. C., Kuoh, C. S., Chuang, M. H., Chen, W. H. & Chen, H. H., 2004 Jul 1, In : Plant and Cell Physiology. 45, 7, p. 831-844 14 p.

Research output: Contribution to journalArticle

135 Citations (Scopus)