An easy-to-implement approach for analyzing case-control and case-only studies assuming gene-environment independence and Hardy-Weinberg equilibrium

Wen Chung Lee, Liang-Yi Wang, K. F. Cheng

Research output: Contribution to journalArticle

9 Citations (Scopus)

Abstract

The case-control study is a simple and an useful method to characterize the effect of a gene, the effect of an exposure, as well as the interaction between the two. The control-free case-only study is yet an even simpler design, if interest is centered on gene-environment interaction only. It requires the sometimes plausible assumption that the gene under study is independent of exposures among the non-diseased in the study populations. The Hardy-Weinberg equilibrium is also sometimes reasonable to assume. This paper presents an easy-to-implement approach for analyzing case-control and case-only studies under the above dual assumptions. The proposed approach, the 'conditional logistic regression with counterfactuals', offers the flexibility for complex modeling yet remains well within the reach to the practicing epidemiologists. When the dual assumptions are met, the conditional logistic regression with counterfactuals is unbiased and has the correct type I error rates. It also results in smaller variances and achieves higher powers as compared with using the conventional analysis (unconditional logistic regression).

Original languageEnglish
Pages (from-to)2557-2567
Number of pages11
JournalStatistics in Medicine
Volume29
Issue number24
DOIs
Publication statusPublished - 2010 Oct 30

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Case-control
Conditional Logistic Regression
Case-Control Studies
Logistic Models
Gene
Gene-environment Interaction
Genes
Gene-Environment Interaction
Type I Error Rate
Case-control Study
Logistic Regression
High Power
Flexibility
Interaction
Modeling
Population
Independence

All Science Journal Classification (ASJC) codes

  • Epidemiology
  • Statistics and Probability

Cite this

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An easy-to-implement approach for analyzing case-control and case-only studies assuming gene-environment independence and Hardy-Weinberg equilibrium. / Lee, Wen Chung; Wang, Liang-Yi; Cheng, K. F.

In: Statistics in Medicine, Vol. 29, No. 24, 30.10.2010, p. 2557-2567.

Research output: Contribution to journalArticle

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