Analysis of chloroplast RNA editing sites in phalaenopsis aphrodite

Ching-Chun Chang, Sin Chung Liao, Wun Hong Zeng

Research output: Chapter in Book/Report/Conference proceedingChapter

Abstract

RNA editing sites were systematically examined for the transcripts of 74 known protein-coding genes in the chloroplasts of P. aphrodite. A total of 44 editing sites were identified in 24 transcripts, the highest number reported in seed plants to date. In addition, 21 editing sites were unique to Phalaenopsis as compared to other seed plants. All editing was C-to-U conversion, and 42 editing sites caused the change in amino acids. One of the remaining two editing sites occurred in transcripts of the ndhB pseudogene, and another in the 5' untranslated region of psbH transcripts. However, RNA editing did not restore the continuous open reading frame in the frameshifted ndh genes, further confirming that they are pseudogenes.

Original languageEnglish
Title of host publicationOrchid Biotechnology II
PublisherWorld Scientific Publishing Co.
Pages267-282
Number of pages16
ISBN (Electronic)9789814327930
ISBN (Print)9814327921, 9789814327923
DOIs
Publication statusPublished - 2011 Jan 1

Fingerprint

Chloroplast RNA
Orchidaceae
RNA Editing
RNA editing
Phalaenopsis
Pseudogenes
pseudogenes
Spermatophytina
Seed
Seeds
chloroplasts
Genes
Chloroplast Genes
RNA
5' Untranslated Regions
5' untranslated regions
Open Reading Frames
open reading frames
genes
Amino Acids

All Science Journal Classification (ASJC) codes

  • Agricultural and Biological Sciences(all)
  • Biochemistry, Genetics and Molecular Biology(all)

Cite this

Chang, C-C., Liao, S. C., & Zeng, W. H. (2011). Analysis of chloroplast RNA editing sites in phalaenopsis aphrodite. In Orchid Biotechnology II (pp. 267-282). World Scientific Publishing Co.. https://doi.org/10.1142/9789814327930_0014
Chang, Ching-Chun ; Liao, Sin Chung ; Zeng, Wun Hong. / Analysis of chloroplast RNA editing sites in phalaenopsis aphrodite. Orchid Biotechnology II. World Scientific Publishing Co., 2011. pp. 267-282
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Chang, C-C, Liao, SC & Zeng, WH 2011, Analysis of chloroplast RNA editing sites in phalaenopsis aphrodite. in Orchid Biotechnology II. World Scientific Publishing Co., pp. 267-282. https://doi.org/10.1142/9789814327930_0014

Analysis of chloroplast RNA editing sites in phalaenopsis aphrodite. / Chang, Ching-Chun; Liao, Sin Chung; Zeng, Wun Hong.

Orchid Biotechnology II. World Scientific Publishing Co., 2011. p. 267-282.

Research output: Chapter in Book/Report/Conference proceedingChapter

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Chang C-C, Liao SC, Zeng WH. Analysis of chloroplast RNA editing sites in phalaenopsis aphrodite. In Orchid Biotechnology II. World Scientific Publishing Co. 2011. p. 267-282 https://doi.org/10.1142/9789814327930_0014