TY - GEN
T1 - Characterizing genes by marginal expression distribution
AU - Wijaya, Edward
AU - Harada, Hajime
AU - Horton, Paul
PY - 2009/12/1
Y1 - 2009/12/1
N2 - We report the results of fitting mixture models to the distribution of expression values for individual genes over a broad range of normal tissues, which we call the marginal distribution of the gene. The base distributions used were normal, lognormal and gamma. The expectation-maximization algorithm was used to learn the model parameters. Experiments with articifial data were performed to ascertain the robustness of learning. Applying the procedure to data from two publicly available microarray datasets, we conclude that lognormal performed the best function for modeling the marginal distributions of gene expression. Our results should provide guidances in the development of informed priors or gene specific normalization for use with gene network inference algorithms.
AB - We report the results of fitting mixture models to the distribution of expression values for individual genes over a broad range of normal tissues, which we call the marginal distribution of the gene. The base distributions used were normal, lognormal and gamma. The expectation-maximization algorithm was used to learn the model parameters. Experiments with articifial data were performed to ascertain the robustness of learning. Applying the procedure to data from two publicly available microarray datasets, we conclude that lognormal performed the best function for modeling the marginal distributions of gene expression. Our results should provide guidances in the development of informed priors or gene specific normalization for use with gene network inference algorithms.
UR - http://www.scopus.com/inward/record.url?scp=73349118129&partnerID=8YFLogxK
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U2 - 10.1007/978-3-642-10238-7_14
DO - 10.1007/978-3-642-10238-7_14
M3 - Conference contribution
AN - SCOPUS:73349118129
SN - 9783642102370
T3 - Communications in Computer and Information Science
SP - 164
EP - 175
BT - Advances in Computational Science and Engineering
A2 - Kim, Tai-hoon
A2 - Yang, Laurence T.
A2 - Park, Jong Hyuk
A2 - Chang, Alan Chin-Chen
A2 - Vasilakos, Thanos
A2 - Zhang, Yan
A2 - Sauveron, Damien
A2 - Wang, Xingang
A2 - Jeong, Young-Sik
ER -