Combination of “quadratic adaptive algorithm” and “hybrid operator splitting” or uniformization algorithms for stability against acceleration in the Markov model of sodium ion channels in the ventricular cell model

Xing Ji Chen, Ching Hsing Luo, Min Hung Chen, Xiang Zhou

Research output: Contribution to journalArticlepeer-review

7 Citations (Scopus)

Abstract

The Markovian model has generally been used for cardiac electrophysiological simulations. However, the Markovian model is so stiff that speeding up the computation of the algorithms with variable time-steps always results in simulation instability. In particular, the unstable simulations always occur at a low voltage rate or current change, while transition rates in the Markovian model are changing markedly. The uniformization (UNI) method allows for a Markovian model simulation with high stability but also a high computation cost. To save computation costs with variable time-steps, we propose a speed increasing idea that is a compromise to the trade-off between stability and acceleration by combining Chen-Chen-Luo’s “quadratic adaptive algorithm” (CCL) method with “hybrid operator splitting” (HOS) into the solver (CCL + HOS solver). The computation cost of this CCL + HOS solver is approximately 24 times lower than the CCL + UNI solver, and the CCL + HOS solver can function 295 times faster in comparison to the HOS solver with a fixed time-step (DT). The suggested optimal solver should be CCL + HOS solver with a maximum time-step at 0.1 ms due to its high speed with low error. Additionally, the CCL method has much better performance and stability than the hybrid method in this single-cell model simulation. [Figure not available: see fulltext.].

Original languageEnglish
Pages (from-to)1367-1379
Number of pages13
JournalMedical and Biological Engineering and Computing
Volume57
Issue number6
DOIs
Publication statusPublished - 2019 Jun 19

All Science Journal Classification (ASJC) codes

  • Biomedical Engineering
  • Computer Science Applications

Fingerprint

Dive into the research topics of 'Combination of “quadratic adaptive algorithm” and “hybrid operator splitting” or uniformization algorithms for stability against acceleration in the Markov model of sodium ion channels in the ventricular cell model'. Together they form a unique fingerprint.

Cite this