TY - JOUR
T1 - Combination of “quadratic adaptive algorithm” and “hybrid operator splitting” or uniformization algorithms for stability against acceleration in the Markov model of sodium ion channels in the ventricular cell model
AU - Chen, Xing Ji
AU - Luo, Ching Hsing
AU - Chen, Min Hung
AU - Zhou, Xiang
N1 - Publisher Copyright:
© 2019, International Federation for Medical and Biological Engineering.
PY - 2019/6/19
Y1 - 2019/6/19
N2 - The Markovian model has generally been used for cardiac electrophysiological simulations. However, the Markovian model is so stiff that speeding up the computation of the algorithms with variable time-steps always results in simulation instability. In particular, the unstable simulations always occur at a low voltage rate or current change, while transition rates in the Markovian model are changing markedly. The uniformization (UNI) method allows for a Markovian model simulation with high stability but also a high computation cost. To save computation costs with variable time-steps, we propose a speed increasing idea that is a compromise to the trade-off between stability and acceleration by combining Chen-Chen-Luo’s “quadratic adaptive algorithm” (CCL) method with “hybrid operator splitting” (HOS) into the solver (CCL + HOS solver). The computation cost of this CCL + HOS solver is approximately 24 times lower than the CCL + UNI solver, and the CCL + HOS solver can function 295 times faster in comparison to the HOS solver with a fixed time-step (DT). The suggested optimal solver should be CCL + HOS solver with a maximum time-step at 0.1 ms due to its high speed with low error. Additionally, the CCL method has much better performance and stability than the hybrid method in this single-cell model simulation. [Figure not available: see fulltext.].
AB - The Markovian model has generally been used for cardiac electrophysiological simulations. However, the Markovian model is so stiff that speeding up the computation of the algorithms with variable time-steps always results in simulation instability. In particular, the unstable simulations always occur at a low voltage rate or current change, while transition rates in the Markovian model are changing markedly. The uniformization (UNI) method allows for a Markovian model simulation with high stability but also a high computation cost. To save computation costs with variable time-steps, we propose a speed increasing idea that is a compromise to the trade-off between stability and acceleration by combining Chen-Chen-Luo’s “quadratic adaptive algorithm” (CCL) method with “hybrid operator splitting” (HOS) into the solver (CCL + HOS solver). The computation cost of this CCL + HOS solver is approximately 24 times lower than the CCL + UNI solver, and the CCL + HOS solver can function 295 times faster in comparison to the HOS solver with a fixed time-step (DT). The suggested optimal solver should be CCL + HOS solver with a maximum time-step at 0.1 ms due to its high speed with low error. Additionally, the CCL method has much better performance and stability than the hybrid method in this single-cell model simulation. [Figure not available: see fulltext.].
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U2 - 10.1007/s11517-019-01956-5
DO - 10.1007/s11517-019-01956-5
M3 - Article
AN - SCOPUS:85062018446
SN - 0140-0118
VL - 57
SP - 1367
EP - 1379
JO - Medical and Biological Engineering and Computing
JF - Medical and Biological Engineering and Computing
IS - 6
ER -