Comparing machine learning with case-control models to identify confirmed dengue cases

Tzong Shiann Ho, Ting Chia Weng, Jung Der Wang, Hsieh Cheng Han, Hao Chien Cheng, Chun Chieh Yang, Chih Hen Yu, Yen Jung Liu, Chien Hsiang Hu, Chun Yu Huang, Ming Hong Chen, Chwan Chuen King, Yen Jen Oyang, Ching Chuan Liu

Research output: Contribution to journalArticlepeer-review

Abstract

In recent decades, the global incidence of dengue has increased. Affected countries have responded with more effective surveillance strategies to detect outbreaks early, monitor the trends, and implement prevention and control measures. We have applied newly developed machine learning approaches to identify laboratory-confirmed dengue cases from 4,894 emergency department patients with dengue-like illness (DLI) who received laboratory tests. Among them, 60.11% (2942 cases) were confirmed to have dengue. Using just four input variables [age, body temperature, white blood cells counts (WBCs) and platelets], not only the state-of-the-art deep neural network (DNN) prediction models but also the conven-tional decision tree (DT) and logistic regression (LR) models delivered performances with receiver operating characteristic (ROC) curves areas under curves (AUCs) of the ranging from 83.75% to 85.87% [for DT, DNN and LR: 84.60% ± 0.03%, 85.87% ± 0.54%, 83.75% ± 0.17%, respectively]. Subgroup analyses found all the models were very sensitive particu-larly in the pre-epidemic period. Pre-peak sensitivities (<35 weeks) were 92.6%, 92.9%, and 93.1% in DT, DNN, and LR respectively. Adjusted odds ratios examined with LR for low WBCs [≤ 3.2 (x103/μL)], fever (≤38˚C), low platelet counts [< 100 (x103/μL)], and elderly (≤ 65 years) were 5.17 [95% confidence interval (CI): 3.96–6.76], 3.17 [95%CI: 2.74–3.66], 3.10 [95%CI: 2.44–3.94], and 1.77 [95%CI: 1.50–2.10], respectively. Our prediction models can readily be used in resource-poor countries where viral/serologic tests are inconvenient and can also be applied for real-time syndromic surveillance to monitor trends of dengue cases and even be integrated with mosquito/environment surveillance for early warning and immediate prevention/control measures. In other words, a local community hospital/clinic with an instrument of complete blood counts (including platelets) can provide a sentinel screening during outbreaks. In conclusion, the machine learning approach can facilitate medical and public health efforts to minimize the health threat of dengue epidemics. How-ever, laboratory confirmation remains the primary goal of surveillance and outbreak investigation.

Original languageEnglish
Article numbere0008843
Pages (from-to)1-21
Number of pages21
JournalPLoS neglected tropical diseases
Volume14
Issue number11
DOIs
Publication statusPublished - 2020 Nov

All Science Journal Classification (ASJC) codes

  • Public Health, Environmental and Occupational Health
  • Infectious Diseases

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