Constructing human brain-function association models from fMRI literature

Mei Yu Hsiao; Der Yow Chen; Jyh Horng Chen

doi:10.1109/IEMBS.2007.4352509

Constructing human brain-function association models from fMRI literature

Mei Yu Hsiao, Der Yow Chen, Jyh Horng Chen

Department of Psychology

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2 Citations (Scopus)

Abstract

Toward the goal of understanding the human brain function, we have developed a web-based Human Brain Functional Mapping Knowledge Base (HBFMKB) system to mining human brain-function association model from vast Medline abstracts. Since nomenclature and relationships among cognitive functions have no consensus yet, we use rule-based natural language processing methods to extract behavioral task and cognitive function and do n-gram approximate concept mapping by the Unified Medical Language system (UMLS) knowledge source. The HBFMKB system has an automatic PubMed MEDLINE download and import system, name entity extraction system and interactive visualization system. In summary, the HBFMKB system helps scientists to get digest knowledge before design experiments and compare their results with current literature.

Original language	English
Title of host publication	29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	1188-1191
Number of pages	4
ISBN (Print)	1424407885, 9781424407880
DOIs	https://doi.org/10.1109/IEMBS.2007.4352509
Publication status	Published - 2007
Event	29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07 - Lyon, France Duration: 2007 Aug 23 → 2007 Aug 26

Publication series

Name	Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings
ISSN (Print)	0589-1019

Other

Other	29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07
Country/Territory	France
City	Lyon
Period	07-08-23 → 07-08-26

All Science Journal Classification (ASJC) codes

Signal Processing
Biomedical Engineering
Computer Vision and Pattern Recognition
Health Informatics

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10.1109/IEMBS.2007.4352509

Cite this

Hsiao, M. Y., Chen, D. Y., & Chen, J. H. (2007). Constructing human brain-function association models from fMRI literature. In 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07 (pp. 1188-1191). Article 4352509 (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/IEMBS.2007.4352509

Hsiao, Mei Yu ; Chen, Der Yow ; Chen, Jyh Horng. / Constructing human brain-function association models from fMRI literature. 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07. Institute of Electrical and Electronics Engineers Inc., 2007. pp. 1188-1191 (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

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title = "Constructing human brain-function association models from fMRI literature",

abstract = "Toward the goal of understanding the human brain function, we have developed a web-based Human Brain Functional Mapping Knowledge Base (HBFMKB) system to mining human brain-function association model from vast Medline abstracts. Since nomenclature and relationships among cognitive functions have no consensus yet, we use rule-based natural language processing methods to extract behavioral task and cognitive function and do n-gram approximate concept mapping by the Unified Medical Language system (UMLS) knowledge source. The HBFMKB system has an automatic PubMed MEDLINE download and import system, name entity extraction system and interactive visualization system. In summary, the HBFMKB system helps scientists to get digest knowledge before design experiments and compare their results with current literature.",

author = "Hsiao, {Mei Yu} and Chen, {Der Yow} and Chen, {Jyh Horng}",

year = "2007",

doi = "10.1109/IEMBS.2007.4352509",

language = "English",

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series = "Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings",

publisher = "Institute of Electrical and Electronics Engineers Inc.",

pages = "1188--1191",

booktitle = "29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07",

address = "United States",

note = "29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07 ; Conference date: 23-08-2007 Through 26-08-2007",

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Hsiao, MY, Chen, DY & Chen, JH 2007, Constructing human brain-function association models from fMRI literature. in 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07., 4352509, Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings, Institute of Electrical and Electronics Engineers Inc., pp. 1188-1191, 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07, Lyon, France, 07-08-23. https://doi.org/10.1109/IEMBS.2007.4352509

Constructing human brain-function association models from fMRI literature. / Hsiao, Mei Yu; Chen, Der Yow; Chen, Jyh Horng.
29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07. Institute of Electrical and Electronics Engineers Inc., 2007. p. 1188-1191 4352509 (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

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AB - Toward the goal of understanding the human brain function, we have developed a web-based Human Brain Functional Mapping Knowledge Base (HBFMKB) system to mining human brain-function association model from vast Medline abstracts. Since nomenclature and relationships among cognitive functions have no consensus yet, we use rule-based natural language processing methods to extract behavioral task and cognitive function and do n-gram approximate concept mapping by the Unified Medical Language system (UMLS) knowledge source. The HBFMKB system has an automatic PubMed MEDLINE download and import system, name entity extraction system and interactive visualization system. In summary, the HBFMKB system helps scientists to get digest knowledge before design experiments and compare their results with current literature.

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Hsiao MY, Chen DY, Chen JH. Constructing human brain-function association models from fMRI literature. In 29th Annual International Conference of IEEE-EMBS, Engineering in Medicine and Biology Society, EMBC'07. Institute of Electrical and Electronics Engineers Inc. 2007. p. 1188-1191. 4352509. (Annual International Conference of the IEEE Engineering in Medicine and Biology - Proceedings). doi: 10.1109/IEMBS.2007.4352509

Constructing human brain-function association models from fMRI literature

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