TY - CHAP
T1 - Localization prediction and structure-based in silico analysis of bacterial proteins
T2 - With emphasis on outer membrane proteins
AU - Imai, Kenichiro
AU - Hayat, Sikander
AU - Sakiyama, Noriyuki
AU - Fujita, Naoya
AU - Tomii, Kentaro
AU - Elofsson, Arne
AU - Horton, Paul
PY - 2013
Y1 - 2013
N2 - In this chapter, we first discuss protein localization in bacteria and evaluate some localization prediction tools on an independent dataset. Next, we focus on β-barrel outer membrane proteins (BOMPs), describing and evaluating new tools for BOMP detection and topology prediction. Finally, we apply general protein structure prediction methods on these proteins to show that the structure of most BOMPs in E. coli can be modeled reliably.
AB - In this chapter, we first discuss protein localization in bacteria and evaluate some localization prediction tools on an independent dataset. Next, we focus on β-barrel outer membrane proteins (BOMPs), describing and evaluating new tools for BOMP detection and topology prediction. Finally, we apply general protein structure prediction methods on these proteins to show that the structure of most BOMPs in E. coli can be modeled reliably.
UR - http://www.scopus.com/inward/record.url?scp=84871900030&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84871900030&partnerID=8YFLogxK
U2 - 10.1007/978-1-62703-107-3_10
DO - 10.1007/978-1-62703-107-3_10
M3 - Chapter
C2 - 23192545
AN - SCOPUS:84871900030
SN - 9781627031066
T3 - Methods in Molecular Biology
SP - 115
EP - 140
BT - Data Mining for Systems Biology
PB - Humana Press Inc.
ER -