TY - JOUR
T1 - Marine picoplankton metagenomes and MAGs from eleven vertical profiles obtained by the Malaspina Expedition
AU - Sánchez, Pablo
AU - Coutinho, Felipe H.
AU - Sebastián, Marta
AU - Pernice, Massimo C.
AU - Rodríguez-Martínez, Raquel
AU - Salazar, Guillem
AU - Cornejo-Castillo, Francisco Miguel
AU - Pesant, Stéphane
AU - López-Alforja, Xabier
AU - López-García, Ester María
AU - Agustí, Susana
AU - Gojobori, Takashi
AU - Logares, Ramiro
AU - Sala, Maria Montserrat
AU - Vaqué, Dolors
AU - Massana, Ramon
AU - Duarte, Carlos M.
AU - Acinas, Silvia G.
AU - Gasol, Josep M.
N1 - Publisher Copyright:
© 2024, The Author(s).
PY - 2024/12
Y1 - 2024/12
N2 - The Ocean microbiome has a crucial role in Earth’s biogeochemical cycles. During the last decade, global cruises such as Tara Oceans and the Malaspina Expedition have expanded our understanding of the diversity and genetic repertoire of marine microbes. Nevertheless, there are still knowledge gaps regarding their diversity patterns throughout depth gradients ranging from the surface to the deep ocean. Here we present a dataset of 76 microbial metagenomes (MProfile) of the picoplankton size fraction (0.2–3.0 µm) collected in 11 vertical profiles covering contrasting ocean regions sampled during the Malaspina Expedition circumnavigation (7 depths, from surface to 4,000 m deep). The MProfile dataset produced 1.66 Tbp of raw DNA sequences from which we derived: 17.4 million genes clustered at 95% sequence similarity (M-GeneDB-VP), 2,672 metagenome-assembled genomes (MAGs) of Archaea and Bacteria (Malaspina-VP-MAGs), and over 100,000 viral genomic sequences. This dataset will be a valuable resource for exploring the functional and taxonomic connectivity between the photic and bathypelagic tropical and sub-tropical ocean, while increasing our general knowledge of the Ocean microbiome.
AB - The Ocean microbiome has a crucial role in Earth’s biogeochemical cycles. During the last decade, global cruises such as Tara Oceans and the Malaspina Expedition have expanded our understanding of the diversity and genetic repertoire of marine microbes. Nevertheless, there are still knowledge gaps regarding their diversity patterns throughout depth gradients ranging from the surface to the deep ocean. Here we present a dataset of 76 microbial metagenomes (MProfile) of the picoplankton size fraction (0.2–3.0 µm) collected in 11 vertical profiles covering contrasting ocean regions sampled during the Malaspina Expedition circumnavigation (7 depths, from surface to 4,000 m deep). The MProfile dataset produced 1.66 Tbp of raw DNA sequences from which we derived: 17.4 million genes clustered at 95% sequence similarity (M-GeneDB-VP), 2,672 metagenome-assembled genomes (MAGs) of Archaea and Bacteria (Malaspina-VP-MAGs), and over 100,000 viral genomic sequences. This dataset will be a valuable resource for exploring the functional and taxonomic connectivity between the photic and bathypelagic tropical and sub-tropical ocean, while increasing our general knowledge of the Ocean microbiome.
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U2 - 10.1038/s41597-024-02974-1
DO - 10.1038/s41597-024-02974-1
M3 - Article
C2 - 38302528
AN - SCOPUS:85183728398
SN - 2052-4463
VL - 11
JO - Scientific Data
JF - Scientific Data
IS - 1
M1 - 154
ER -
