Structural study of TcaR and its complexes with multiple antibiotics from Staphylococcus epidermidis

Yu Ming Chang, Wen-Yih Jeng, Tzu Ping Ko, Yao Jen Yeh, Cammy K.M. Chen, Andrew H.J. Wang

Research output: Contribution to journalArticle

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Abstract

TcaR and IcaR are a weak and a strong negative regulator of transcription of the ica locus, respectively, and their presence prevents the poly-N-acetylglucosamine production and biofilm formation in Staphylococcus epidermidis. Although TcaR was shown to interact with the ica promoter, the precise binding region and the mechanism of interaction remained unclear. Here we present the 3D structure of TcaR in its apo form and in complex with salicylate as well as several aminoglycoside and β-lactam antibiotics. A comparison of the native and complex TcaR structures indicates that the mechanism of regulation involves a large conformational change in the DNA-binding lobe. Here, we deduced the consensus binding sequence of two [∼TTNNAA] hexamers embedded in a 16 bp sequence for a TcaR dimer. Six TcaR dimers bind specifically to three approximately 33 bp segments close to the IcaR binding region with varying affinities, and their repressor activity is directly interfered by salicylate and different classes of natural antimicrobial compounds. We also found in this study that the antimicrobial compounds we tested were shown not only to inhibit TcaR-DNA interaction but also to further induce biofilm formation in S. epidermidis in our in vivo assay. The results support a general mechanism for antibiotics in regulating TcaR-DNA interaction and thereby help understand the effect of antibiotic exposure on bacterial antibiotic resistance through biofilm formation.

Original languageEnglish
Pages (from-to)8617-8622
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume107
Issue number19
DOIs
Publication statusPublished - 2010 May 11

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Staphylococcus epidermidis
Iron-Dextran Complex
Biofilms
Salicylates
Anti-Bacterial Agents
DNA
Bacterial Drug Resistance
Lactams
Acetylglucosamine
Consensus Sequence
Aminoglycosides

All Science Journal Classification (ASJC) codes

  • General

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Chang, Yu Ming ; Jeng, Wen-Yih ; Ko, Tzu Ping ; Yeh, Yao Jen ; Chen, Cammy K.M. ; Wang, Andrew H.J. / Structural study of TcaR and its complexes with multiple antibiotics from Staphylococcus epidermidis. In: Proceedings of the National Academy of Sciences of the United States of America. 2010 ; Vol. 107, No. 19. pp. 8617-8622.
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Structural study of TcaR and its complexes with multiple antibiotics from Staphylococcus epidermidis. / Chang, Yu Ming; Jeng, Wen-Yih; Ko, Tzu Ping; Yeh, Yao Jen; Chen, Cammy K.M.; Wang, Andrew H.J.

In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 107, No. 19, 11.05.2010, p. 8617-8622.

Research output: Contribution to journalArticle

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