The new fioreDB database provides comprehensive information on plant transcription factors and phenotypes induced by CRES-T in ornamental and model plants

Nobutaka Mitsuda, Yuko Takiguchi, Masahito Shikata, Kimiyo Sage-Ono, Michiyuki Ono, Katsutomo Sasaki, Hiroyasu Yamaguchi, Takako Narumi, Yuri Tanaka, Masao Sugiyama, Tomomichi Yamamura, Teruhiko Terakawa, Keiko Gion, Ryota Suzuri, Yoshikazu Tanaka, Takashi Nakatsuka, Souichi Kimura, Masahiro Nishihara, Tomoyuki Sakai, Reiko Endo-OnoderaKumi Saitoh, Kanji Isuzugawa, Yoshimi Oshima, Miho Ikeda, Megumi Narukawa, Kyoko Matsui, Masaru Nakata, Norihiro Ohtsubo, Masaru Ohme-Takagi

Research output: Contribution to journalArticlepeer-review

23 Citations (Scopus)

Abstract

FioreDB (http://www.cres-t.org/fiore/public_db/) is a database of phenotypes induced by Chimeric REpressorgene-Silencing Technology (CRES-T) in ornamental and model plants. CRES-T induces a loss-of-function phenotype of a transcription factor (TF) gene by expression of a chimeric repressor produced by fusion of a TF to the strong transcriptional repression domain (SRDX). The earlier version of FioreDB provided phenotypic information induced by many kinds of chimeric repressors in various plants including torenia, chrysanthemum, cyclamen, gentian, morning glory, lisianthus and Arabidopsis. Phenotypic information, however, was not linked with gene information. We report here the development of the new FioreDB that provides more than 300 phenotypic information of various plants, linked to more than 100 TFs. FioreDB also provides information about classification of TFs, putative repression motifs found in TFs and other proteins, and incorporates publicly available gene information such as sequences and microarray data for all Arabidopsis genes. The new FioreDB described here, will be a valuable resource for basic research of TFs and for the manipulation of traits of agronomically important plants by CRES-T, especially from the point of view of horticulture.

Original languageEnglish
Pages (from-to)123-130
Number of pages8
JournalPlant Biotechnology
Volume28
Issue number2
DOIs
Publication statusPublished - 2011

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Agronomy and Crop Science
  • Plant Science

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