TY - JOUR
T1 - The new fioreDB database provides comprehensive information on plant transcription factors and phenotypes induced by CRES-T in ornamental and model plants
AU - Mitsuda, Nobutaka
AU - Takiguchi, Yuko
AU - Shikata, Masahito
AU - Sage-Ono, Kimiyo
AU - Ono, Michiyuki
AU - Sasaki, Katsutomo
AU - Yamaguchi, Hiroyasu
AU - Narumi, Takako
AU - Tanaka, Yuri
AU - Sugiyama, Masao
AU - Yamamura, Tomomichi
AU - Terakawa, Teruhiko
AU - Gion, Keiko
AU - Suzuri, Ryota
AU - Tanaka, Yoshikazu
AU - Nakatsuka, Takashi
AU - Kimura, Souichi
AU - Nishihara, Masahiro
AU - Sakai, Tomoyuki
AU - Endo-Onodera, Reiko
AU - Saitoh, Kumi
AU - Isuzugawa, Kanji
AU - Oshima, Yoshimi
AU - Ikeda, Miho
AU - Narukawa, Megumi
AU - Matsui, Kyoko
AU - Nakata, Masaru
AU - Ohtsubo, Norihiro
AU - Ohme-Takagi, Masaru
PY - 2011
Y1 - 2011
N2 - FioreDB (http://www.cres-t.org/fiore/public_db/) is a database of phenotypes induced by Chimeric REpressorgene-Silencing Technology (CRES-T) in ornamental and model plants. CRES-T induces a loss-of-function phenotype of a transcription factor (TF) gene by expression of a chimeric repressor produced by fusion of a TF to the strong transcriptional repression domain (SRDX). The earlier version of FioreDB provided phenotypic information induced by many kinds of chimeric repressors in various plants including torenia, chrysanthemum, cyclamen, gentian, morning glory, lisianthus and Arabidopsis. Phenotypic information, however, was not linked with gene information. We report here the development of the new FioreDB that provides more than 300 phenotypic information of various plants, linked to more than 100 TFs. FioreDB also provides information about classification of TFs, putative repression motifs found in TFs and other proteins, and incorporates publicly available gene information such as sequences and microarray data for all Arabidopsis genes. The new FioreDB described here, will be a valuable resource for basic research of TFs and for the manipulation of traits of agronomically important plants by CRES-T, especially from the point of view of horticulture.
AB - FioreDB (http://www.cres-t.org/fiore/public_db/) is a database of phenotypes induced by Chimeric REpressorgene-Silencing Technology (CRES-T) in ornamental and model plants. CRES-T induces a loss-of-function phenotype of a transcription factor (TF) gene by expression of a chimeric repressor produced by fusion of a TF to the strong transcriptional repression domain (SRDX). The earlier version of FioreDB provided phenotypic information induced by many kinds of chimeric repressors in various plants including torenia, chrysanthemum, cyclamen, gentian, morning glory, lisianthus and Arabidopsis. Phenotypic information, however, was not linked with gene information. We report here the development of the new FioreDB that provides more than 300 phenotypic information of various plants, linked to more than 100 TFs. FioreDB also provides information about classification of TFs, putative repression motifs found in TFs and other proteins, and incorporates publicly available gene information such as sequences and microarray data for all Arabidopsis genes. The new FioreDB described here, will be a valuable resource for basic research of TFs and for the manipulation of traits of agronomically important plants by CRES-T, especially from the point of view of horticulture.
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U2 - 10.5511/plantbiotechnology.11.0106a
DO - 10.5511/plantbiotechnology.11.0106a
M3 - Article
AN - SCOPUS:79954567236
SN - 1342-4580
VL - 28
SP - 123
EP - 130
JO - Plant Biotechnology
JF - Plant Biotechnology
IS - 2
ER -