Three-dimensional structure of the catalytic domain of chitinase A1 from Bacillus circulans WL-12 at a very high resolution

Takuo Matsumoto, Takamasa Nonaka, Masayuki Hashimoto, Takeshi Watanabe, Yukio Mitsui

Research output: Contribution to journalArticle

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Abstract

The mature form of chitinase A1 from Bacillus circulans WL-12 (one of the family 18 glycosyl hydrolases) comprises an N-terminal catalytic domain, two fibronectin type III domains and a C-terminal chitin-binding domain. In the efforts for crystallizing each domain, combined domains and the intact mature form, we have obtained crystals of the catalytic domain which diffract to a truly atomic resolution (1.13 Å). The catalytic domain consists of an (α/β) 8 -TIM-barrel. Two small β-domains attached on top of the TIM-barrel provide a deep cleft for substrate binding. Crystals of an inactivated (through Glu204Gln mutation) catalytic domain complexed with a heptameric N-acetyl glucosamine (7NAG (N I , N II , N III , N IV , N V , N VI , N VII -hepta-acetyl-chitoheptaose which is a β-1, 4-linked oligosaccharide of N-acetylglucosamine with a polymerization degree of seven.), which is a true substrate) diffracted up to 1.5 Å resolution. The bound 7NAG substrate showed a marked kink between the sugar units at positions -1 and +1. The proximity of Glu204 to the scissile site strongly supports the hitherto conceived notion that Glu204 plays a role of catalytic acid in the so-called "substrate-assisted catalysis" mechanism which is distinct from the general acid-base mechanism long accepted for lysozyme and related glycosyl hydrolases.

Original languageEnglish
Pages (from-to)269-274
Number of pages6
JournalProceedings of the Japan Academy Series B: Physical and Biological Sciences
Volume75
Issue number9
DOIs
Publication statusPublished - 1999 Jan 1

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Bacillus circulans
Chitinases
Bacillus
chitinase
active sites
Catalytic Domain
high resolution
N-glycoside hydrolases
crystals
N-Glycosyl Hydrolases
N-acetylglucosamine
Acids
Chitin
Acetylglucosamine
fibronectins
glycosidases
glucosamine
acids
Glucosamine
Hydrolases

All Science Journal Classification (ASJC) codes

  • Agricultural and Biological Sciences(all)
  • Physics and Astronomy(all)

Cite this

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title = "Three-dimensional structure of the catalytic domain of chitinase A1 from Bacillus circulans WL-12 at a very high resolution",
abstract = "The mature form of chitinase A1 from Bacillus circulans WL-12 (one of the family 18 glycosyl hydrolases) comprises an N-terminal catalytic domain, two fibronectin type III domains and a C-terminal chitin-binding domain. In the efforts for crystallizing each domain, combined domains and the intact mature form, we have obtained crystals of the catalytic domain which diffract to a truly atomic resolution (1.13 {\AA}). The catalytic domain consists of an (α/β) 8 -TIM-barrel. Two small β-domains attached on top of the TIM-barrel provide a deep cleft for substrate binding. Crystals of an inactivated (through Glu204Gln mutation) catalytic domain complexed with a heptameric N-acetyl glucosamine (7NAG (N I , N II , N III , N IV , N V , N VI , N VII -hepta-acetyl-chitoheptaose which is a β-1, 4-linked oligosaccharide of N-acetylglucosamine with a polymerization degree of seven.), which is a true substrate) diffracted up to 1.5 {\AA} resolution. The bound 7NAG substrate showed a marked kink between the sugar units at positions -1 and +1. The proximity of Glu204 to the scissile site strongly supports the hitherto conceived notion that Glu204 plays a role of catalytic acid in the so-called {"}substrate-assisted catalysis{"} mechanism which is distinct from the general acid-base mechanism long accepted for lysozyme and related glycosyl hydrolases.",
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Three-dimensional structure of the catalytic domain of chitinase A1 from Bacillus circulans WL-12 at a very high resolution. / Matsumoto, Takuo; Nonaka, Takamasa; Hashimoto, Masayuki; Watanabe, Takeshi; Mitsui, Yukio.

In: Proceedings of the Japan Academy Series B: Physical and Biological Sciences, Vol. 75, No. 9, 01.01.1999, p. 269-274.

Research output: Contribution to journalArticle

TY - JOUR

T1 - Three-dimensional structure of the catalytic domain of chitinase A1 from Bacillus circulans WL-12 at a very high resolution

AU - Matsumoto, Takuo

AU - Nonaka, Takamasa

AU - Hashimoto, Masayuki

AU - Watanabe, Takeshi

AU - Mitsui, Yukio

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AB - The mature form of chitinase A1 from Bacillus circulans WL-12 (one of the family 18 glycosyl hydrolases) comprises an N-terminal catalytic domain, two fibronectin type III domains and a C-terminal chitin-binding domain. In the efforts for crystallizing each domain, combined domains and the intact mature form, we have obtained crystals of the catalytic domain which diffract to a truly atomic resolution (1.13 Å). The catalytic domain consists of an (α/β) 8 -TIM-barrel. Two small β-domains attached on top of the TIM-barrel provide a deep cleft for substrate binding. Crystals of an inactivated (through Glu204Gln mutation) catalytic domain complexed with a heptameric N-acetyl glucosamine (7NAG (N I , N II , N III , N IV , N V , N VI , N VII -hepta-acetyl-chitoheptaose which is a β-1, 4-linked oligosaccharide of N-acetylglucosamine with a polymerization degree of seven.), which is a true substrate) diffracted up to 1.5 Å resolution. The bound 7NAG substrate showed a marked kink between the sugar units at positions -1 and +1. The proximity of Glu204 to the scissile site strongly supports the hitherto conceived notion that Glu204 plays a role of catalytic acid in the so-called "substrate-assisted catalysis" mechanism which is distinct from the general acid-base mechanism long accepted for lysozyme and related glycosyl hydrolases.

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