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出版年份

  • 2020
  • 2019
  • 2018
  • 2017
  • 2016

作者

  • Yu Shyr
2018

Strategies for processing and quality control of Illumina genotyping arrays

Zhao, S., Jing, W., Samuels, D. C., Sheng, Q., Shyr, Y. & Guo, Y., 2018 九月 28, 於 : Briefings in bioinformatics. 19, 5, p. 765-775 11 p.

研究成果: Article

7 引文 斯高帕斯(Scopus)
2019

BeRBP: Binding estimation for human RNA-binding proteins

Yu, H., Wang, J., Sheng, Q., Liu, Q. & Shyr, Y., 2019 三月 18, 於 : Nucleic acids research. 47, 5, e26.

研究成果: Article

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9 引文 斯高帕斯(Scopus)
2018

Directed solutions to address differences in access to liver transplantation

Ye, F., Sheng, Q., Feurer, I. D., Zhao, Z., Fan, R., Teng, J., Ping, J., Rega, S. A., Hanto, D. W., Shyr, Y. & Karp, S. J., 2018 十一月, 於 : American Journal of Transplantation. 18, 11, p. 2670-2678 9 p.

研究成果: Article

6 引文 斯高帕斯(Scopus)

Dynamics of Zebrafish Heart Regeneration Using an HPLC-ESI-MS/MS Approach

Ma, D., Tu, C., Sheng, Q., Yang, Y., Kan, Z., Guo, Y., Shyr, Y., Scott, I. C. & Lou, X., 2018 三月 2, 於 : Journal of Proteome Research. 17, 3, p. 1300-1308 9 p.

研究成果: Article

6 引文 斯高帕斯(Scopus)
2017
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7 引文 斯高帕斯(Scopus)
2020

Immune-Related Adverse Events and Immune Checkpoint Inhibitor Efficacy in Patients with Gastrointestinal Cancer with Food and Drug Administration-Approved Indications for Immunotherapy

Das, S., Ciombor, K. K., Haraldsdottir, S., Pumpalova, Y., Sahin, I. H., Pineda, G., Shyr, Y., Lin, E. P., Hsu, C. Y., Chu, S. K., Goff, L. W., Cardin, D. B., Bilen, M. A., Fisher, G. A., Wu, C. & Berlin, J., 2020 八月 1, 於 : Oncologist. 25, 8, p. 669-679 11 p.

研究成果: Article

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1 引文 斯高帕斯(Scopus)
2017
2 引文 斯高帕斯(Scopus)

Genomic profiling of ER+ breast cancers after short-term estrogen suppression reveals alterations associated with endocrine resistance

Giltnane, J. M., Hutchinson, K. E., Stricker, T. P., Formisano, L., Young, C. D., Estrada, M. V., Nixon, M. J., Du, L., Sanchez, V., Ericsson, P. G., Kuba, M. G., Sanders, M. E., Mu, X. J., Van Allen, E. M., Wagle, N., Mayer, I. A., Abramson, V., Gómez, H., Rizzo, M., Toy, W. 及其他15, Chandarlapaty, S., Mayer, E. L., Christiansen, J., Murphy, D., Fitzgerald, K., Wang, K., Ross, J. S., Miller, V. A., Stephens, P. J., Yelensky, R., Garraway, L., Shyr, Y., Meszoely, I., Balko, J. M. & Arteaga, C. L., 2017 八月 9, 於 : Science translational medicine. 9, 402, aai7993.

研究成果: Article

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32 引文 斯高帕斯(Scopus)
2018

Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation

Wang, J., Zhao, Y., Zhou, X., Hiebert, S. W., Liu, Q. & Shyr, Y., 2018 八月 23, 於 : BMC genomics. 19, 1, 633.

研究成果: Article

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8 引文 斯高帕斯(Scopus)
2017

The Utilization of Formalin Fixed-Paraffin-Embedded Specimens in High Throughput Genomic Studies

Zhang, P., Lehmann, B. D., Shyr, Y. & Guo, Y., 2017, 於 : International Journal of Genomics. 2017, 1926304.

研究成果: Review article

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31 引文 斯高帕斯(Scopus)

Determining penetration of prostate-specific antigen screening recommendations

Thomas, C. R. & Shyr, Y., 2017 一月 1, 於 : JAMA Oncology. 3, 5, 1 p.

研究成果: Editorial

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3 引文 斯高帕斯(Scopus)

Improvements and impacts of GRCh38 human reference on high throughput sequencing data analysis

Guo, Y., Dai, Y., Yu, H., Zhao, S., Samuels, D. C. & Shyr, Y., 2017 三月 1, 於 : Genomics. 109, 2, p. 83-90 8 p.

研究成果: Article

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29 引文 斯高帕斯(Scopus)

Shanghai score: A prognostic and adjuvant treatment-evaluating system constructed for Chinese patients with hepatocellular carcinoma after curative resection

Sun, H. C., Xie, L., Yang, X. R., Li, W., Yu, J., Zhu, X. D., Xia, Y., Zhang, T., Xu, Y., Hu, B., Du, L. P., Zeng, L. Y., Ouyang, J., Zhang, W., Song, T. Q., Li, Q., Shi, Y. H., Zhou, J., Qiu, S. J., Liu, Q. 及其他5, Li, Y. X., Tang, Z. Y., Shyr, Y., Shen, F. & Fan, J., 2017 十一月 20, 於 : Chinese Medical Journal. 130, 22, p. 2650-2660 11 p.

研究成果: Article

7 引文 斯高帕斯(Scopus)
2016

Refinement of triple-negative breast cancer molecular subtypes: Implications for neoadjuvant chemotherapy selection

Lehmann, B. D., Jovanović, B., Chen, X., Estrada, M. V., Johnson, K. N., Shyr, Y., Moses, H. L., Sanders, M. E. & Pietenpol, J. A., 2016 六月, 於 : PloS one. 11, 6, e0157368.

研究成果: Article

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310 引文 斯高帕斯(Scopus)
2017

Genomic profiling of T-cell neoplasms reveals frequent JAK1 and JAK3 mutations with clonal evasion from targeted therapies

Greenplate, A., Wang, K., Tripathi, R. M., Palma, N., Ali, S. M., Stephens, P. J., Miller, V. A., Shyr, Y., Guo, Y., Reddy, N. M., Kozhaya, L., Unutmaz, D., Chen, X., Irish, J. M. & Davé, U. P., 2017, 於 : JCO Precision Oncology. 1

研究成果: Article

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4 引文 斯高帕斯(Scopus)

Etoposide and cisplatin versus paclitaxel and carboplatin with concurrent thoracic radiotherapy in unresectable stage III non-small cell lung cancer: A multicenter randomized phase III trial

Liang, J., Bi, N., Wu, S., Chen, M., Lv, C., Zhao, L., Shi, A., Jiang, W., Xu, Y., Zhou, Z., Wang, W., Chen, D., Hui, Z., Lv, J., Zhang, H., Feng, Q., Xiao, Z., Wang, X., Liu, L., Zhang, T. 及其他7, Du, L., Chen, W., Shyr, Y., Yin, W., Li, J., He, J. & Wang, L., 2017 四月 1, 於 : Annals of Oncology. 28, 4, p. 777-783 7 p., mdx009.

研究成果: Article

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48 引文 斯高帕斯(Scopus)
2020

Outcomes of acute cardiovascular events in rheumatoid arthritis and systemic lupus erythematosus: A population-based study

Lai, C. H., Lai, C. H., Lai, C. H., Hsieh, C. Y., Barnado, A., Huang, L. C., Huang, L. C., Chen, S. C., Chen, S. C., Tsai, L. M., Shyr, Y., Shyr, Y. & Li, C. Y., 2020 六月 1, 於 : Rheumatology (United Kingdom). 59, 6, p. 1355-1363 9 p.

研究成果: Article

1 引文 斯高帕斯(Scopus)
2016

Mitochondria single nucleotide variation across six blood cell types

Zhang, P., Samuels, D. C., Wang, J., Zhao, S., Shyr, Y. & Guo, Y., 2016 五月 1, 於 : Mitochondrion. 28, p. 16-22 7 p.

研究成果: Article

3 引文 斯高帕斯(Scopus)

Disrupted cooperation between transcription factors across diverse cancer types

Wang, J., Liu, Q., Sun, J. & Shyr, Y., 2016 八月 5, 於 : BMC genomics. 17, 1, 560.

研究成果: Article

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2 引文 斯高帕斯(Scopus)
2019

Income, costs, and health care utilization may influence surgical choice in early stage breast cancer

Sweeting, R. S., Du, L., Shyr, Y. & Hooks, M. A., 2019 三月 1, 於 : Breast Journal. 25, 2, p. 334-337 4 p.

研究成果: Comment/debate

2016

Heterozygosity ratio, a robust global genomic measure of autozygosity and its association with height and disease risk

Samuels, D. C., Wang, J., Ye, F., He, J., Levinson, R. T., Sheng, Q., Zhao, S., Capra, J. A., Shyr, Y., Zheng, W. & Guo, Y., 2016 十一月, 於 : Genetics. 204, 3, p. 893-904 12 p.

研究成果: Article

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6 引文 斯高帕斯(Scopus)
2020

Quantitative analysis of oncology professional learning preferences

George, T. J., Manochakian, R., Wood, M., Polansky, M., Baer, A., Grupe, A., Shyr, Y., Wang, C., Williams, J. & Horn, L., 2020 二月 1, 於 : JCO Oncology Practice. 16, 2, p. E155-E165

研究成果: Article

2016

Utility of [18F]FSPG PET to Image Hepatocellular Carcinoma: First Clinical Evaluation in a US Population

Kavanaugh, G., Williams, J., Morris, A. S., Nickels, M. L., Walker, R., Koglin, N., Stephens, A. W., Washington, M. K., Geevarghese, S. K., Liu, Q., Ayers, D., Shyr, Y. & Manning, H. C., 2016 十二月 1, 於 : Molecular Imaging and Biology. 18, 6, p. 924-934 11 p.

研究成果: Article

20 引文 斯高帕斯(Scopus)

Connecting the Dots: Therapy-Induced Senescence and a Tumor-Suppressive Immune Microenvironment

Vilgelm, A. E., Johnson, C. A., Prasad, N., Yang, J., Chen, S. C., Ayers, G. D., Pawlikowski, J. S., Raman, D., Sosman, J. A., Kelley, M., Ecsedy, J. A., Shyr, Y., Levy, S. E. & Richmond, A., 2016 六月 1, 於 : Journal of the National Cancer Institute. 108, 6, djv406.

研究成果: Article

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24 引文 斯高帕斯(Scopus)
2017

StrandScript: Evaluation of Illumina genotyping array design and strand correction

Wang, J., Samuels, D. C., Shyr, Y. & Guo, Y., 2017 八月 1, 於 : Bioinformatics. 33, 15, p. 2399-2401 3 p.

研究成果: Article

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2 引文 斯高帕斯(Scopus)

Non-Invasive Glutamine PET Reflects Pharmacological Inhibition of BRAFV600E In Vivo

Schulte, M. L., Hight, M. R., Ayers, G. D., Liu, Q., Shyr, Y., Washington, M. K. & Manning, H. C., 2017 六月 1, 於 : Molecular Imaging and Biology. 19, 3, p. 421-428 8 p.

研究成果: Article

6 引文 斯高帕斯(Scopus)
2018

First-line Chemotherapy Responsiveness and Patterns of Metastatic Spread Identify Clinical Syndromes Present Within Advanced KRAS Mutant Non–Small-cell Lung Cancer With Different Prognostic Significance

Iams, W. T., Yu, H., Shyr, Y., Patil, T., Horn, L., McCoach, C., Kelly, K., Doebele, R. C. & Camidge, D. R., 2018 十一月, 於 : Clinical Lung Cancer. 19, 6, p. 531-543 13 p.

研究成果: Article

2017

Sample size calculation for differential expression analysis of RNA-seq data

Hoskins, S. P., Shyr, D. & Shyr, Y., 2017 十月 3, Frontiers of Biostatistical Methods and Applications in Clinical Oncology. Springer Singapore, p. 359-379 21 p.

研究成果: Chapter

2016

RNA sequencing identifies transcriptionally viable gene fusions in esophageal adenocarcinomas

Blum, A. E., Venkitachalam, S., Guo, Y., Kieber-Emmons, A. M., Ravi, L., Chandar, A. K., Iyer, P. G., Canto, M. I., Wang, J. S., Shaheen, N. J., Barnholtz-Sloan, J. S., Markowitz, S. D., Willis, J. E., Shyr, Y., Chak, A., Varadan, V. & Guda, K., 2016 十月 1, 於 : Cancer Research. 76, 19, p. 5628-5633 6 p.

研究成果: Article

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14 引文 斯高帕斯(Scopus)

Practicability of mitochondrial heteroplasmy detection through an Illumina genotyping array

Zhang, P., Samuels, D. C., Zhao, S., Wang, J., Shyr, Y. & Guo, Y., 2016 十一月 1, 於 : Mitochondrion. 31, p. 75-78 4 p.

研究成果: Article

2 引文 斯高帕斯(Scopus)
2018

Forecasting Construction Cost Index based on visibility graph: A network approach

Zhang, R., Ashuri, B., Shyr, Y. & Deng, Y., 2018 三月 1, 於 : Physica A: Statistical Mechanics and its Applications. 493, p. 239-252 14 p.

研究成果: Article

12 引文 斯高帕斯(Scopus)
2020

Mortality of Cardiovascular Events in Patients With COPD and Preceding Hospitalization for Acute Exacerbation

Wang, M., Lin, E. P. Y., Huang, L. C., Li, C. Y., Shyr, Y. & Lai, C. H., 2020 九月, 於 : Chest. 158, 3, p. 973-985 13 p.

研究成果: Article

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2 引文 斯高帕斯(Scopus)
2017

Institute of Medicine Measures of Social and Behavioral Determinants of Health: A Feasibility Study

Giuse, N. B., Koonce, T. Y., Kusnoor, S. V., Prather, A. A., Gottlieb, L. M., Huang, L. C., Phillips, S. E., Shyr, Y., Adler, N. E. & Stead, W. W., 2017 二月 1, 於 : American Journal of Preventive Medicine. 52, 2, p. 199-206 8 p.

研究成果: Article

21 引文 斯高帕斯(Scopus)

A randomized phase II neoadjuvant study of cisplatin, paclitaxel with or without everolimus in patients with stage II/III triple-negative breast cancer (TNBC): Responses and long-term outcome correlated with increased frequency of DNA damage response gene mutations, TNBC subtype, AR status, and Ki67

Jovanovic, B., Mayer, I. A., Mayer, E. L., Abramson, V. G., Bardia, A., Sanders, M. E., Kuba, M. G., Estrada, M. V., Beeler, J. S., Shaver, T. M., Johnson, K. C., Sanchez, V., Rosenbluth, J. M., Dillon, P. M., Forero-Torres, A., Chang, J. C., Meszoely, I. M., Grau, A. M., Lehmann, B. D., Shyr, Y. 及其他4, Sheng, Q., Chen, S. C., Arteaga, C. L. & Pietenpol, J. A., 2017 八月 1, 於 : Clinical Cancer Research. 23, 15, p. 4035-4045 11 p.

研究成果: Article

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35 引文 斯高帕斯(Scopus)
2019

ScRNABatchQC: Multi-samples quality control for single cell RNA-seq data

Liu, Q., Sheng, Q., Ping, J., Ramirez, M. A., Lau, K. S., Coffey, R. J. & Shyr, Y., 2019 十二月 15, 於 : Bioinformatics. 35, 24, p. 5306-5308 3 p.

研究成果: Article

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1 引文 斯高帕斯(Scopus)
2018

RnaSeqSampleSize: Real data based sample size estimation for RNA sequencing

Zhao, S., Li, C. I., Guo, Y., Sheng, Q. & Shyr, Y., 2018 五月 30, 於 : BMC Bioinformatics. 19, 1, 191.

研究成果: Article

11 引文 斯高帕斯(Scopus)
2017

Integrated expression analysis identifies transcription networks in mouse and human gastric neoplasia

Chen, Z., Soutto, M., Rahman, B., Fazili, M. W., Peng, D. F., Blanca Piazuelo, M., Chen, H., Kay Washington, M., Shyr, Y. & El-Rifai, W., 2017 七月, 於 : Genes Chromosomes and Cancer. 56, 7, p. 535-547 13 p.

研究成果: Article

10 引文 斯高帕斯(Scopus)
2018

Interplay between miRNAs and host genes and their role in cancer

Liu, B., Shyr, Y., Cai, J. & Liu, Q., 2018, 於 : Briefings in functional genomics. 18, 4, p. 255-266 12 p.

研究成果: Article

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15 引文 斯高帕斯(Scopus)
2017

The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data

Guo, Y., Zhao, S., Sheng, Q., Samuels, D. C. & Shyr, Y., 2017 十月 3, 於 : BMC genomics. 18, 690.

研究成果: Article

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10 引文 斯高帕斯(Scopus)
2016

Targeted next generation sequencing identifies markers of response to PD-1 blockade

Johnson, D. B., Frampton, G. M., Rioth, M. J., Yusko, E., Xu, Y., Guo, X., Ennis, R. C., Fabrizio, D., Chalmers, Z. R., Greenbowe, J., Ali, S. M., Balasubramanian, S., Sun, J. X., He, Y., Frederick, D. T., Puzanov, I., Balko, J. M., Cates, J. M., Ross, J. S., Sanders, C. 及其他7, Robins, H., Shyr, Y., Miller, V. A., Stephens, P. J., Sullivan, R. J., Sosman, J. A. & Lovly, C. M., 2016 十一月, 於 : Cancer Immunology Research. 4, 11, p. 959-967 9 p.

研究成果: Article

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205 引文 斯高帕斯(Scopus)
2019

HACER: An atlas of human active enhancers to interpret regulatory variants

Wang, J., Dai, X., Berry, L. D., Cogan, J. D., Liu, Q. & Shyr, Y., 2019 一月 8, 於 : Nucleic acids research. 47, D1, p. D106-D112

研究成果: Article

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10 引文 斯高帕斯(Scopus)

Identification of targetable recurrent MAP3K8 rearrangements in melanomas lacking known driver mutations

Lehmann, B. D., Shaver, T. M., Johnson, D. B., Li, Z., Gonzalez-Ericsson, P. I., Sánchez, V., Shyr, Y., Sanders, M. E. & Pietenpol, J. A., 2019, 於 : Molecular Cancer Research. 17, 9, p. 1842-1853 12 p.

研究成果: Article

4 引文 斯高帕斯(Scopus)
2017

Estimating relative mitochondrial DNA copy number using high throughput sequencing data

Zhang, P., Lehmann, B. D., Samuels, D. C., Zhao, S., Zhao, Y. Y., Shyr, Y. & Guo, Y., 2017 十月, 於 : Genomics. 109, 5-6, p. 457-462 6 p.

研究成果: Article

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6 引文 斯高帕斯(Scopus)