Inference on phenotype-specific effects of genes using multivariate kernel machine regression

Arnab Maity, Jing Zhao, Patrick F. Sullivan, Jung Ying Tzeng

研究成果: Article同行評審

摘要

We consider the problem of assessing the joint effect of a set of genetic markers on multiple, possibly correlated phenotypes of interest. We develop a kernel machine based multivariate regression framework, where the joint effect of the marker set on each of the phenotypes is modeled using prespecified kernel functions with unknown variance components. Unlike most existing methods that mainly focus on the global association between the marker set and the phenotype set, we develop estimation and testing procedures to study phenotype-specific associations. Specifically, we develop an estimation method based on the penalized likelihood approach to estimate phenotype-specific effects and their corresponding standard errors while accounting for possible correlation among the phenotypes. We develop testing procedures for the association of the marker set with any subset of phenotypes using a score-based variance components testing method. We assess the performance of our proposed methodology via a simulation study and demonstrate the utility of the proposed method using the Clinical Antipsychotic Trials of Intervention Effectiveness (CATIE) data.

原文English
頁(從 - 到)64-79
頁數16
期刊Genetic Epidemiology
42
發行號1
DOIs
出版狀態Published - 2018 二月 1

All Science Journal Classification (ASJC) codes

  • Epidemiology
  • Genetics(clinical)

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