Localization prediction and structure-based in silico analysis of bacterial proteins: With emphasis on outer membrane proteins

Kenichiro Imai, Sikander Hayat, Noriyuki Sakiyama, Naoya Fujita, Kentaro Tomii, Arne Elofsson, Brice Horton Ii Paul

研究成果: Chapter

1 引文 (Scopus)

摘要

In this chapter, we first discuss protein localization in bacteria and evaluate some localization prediction tools on an independent dataset. Next, we focus on β-barrel outer membrane proteins (BOMPs), describing and evaluating new tools for BOMP detection and topology prediction. Finally, we apply general protein structure prediction methods on these proteins to show that the structure of most BOMPs in E. coli can be modeled reliably.

原文English
主出版物標題Data Mining for Systems Biology
主出版物子標題Methods and Protocols
編輯Hiroshi Mamitsuka, Minoru Kanehisa, Charles DeLisi
頁面115-140
頁數26
DOIs
出版狀態Published - 2013 一月 8

出版系列

名字Methods in Molecular Biology
939
ISSN(列印)1064-3745

指紋

Bacterial Proteins
Computer Simulation
Membrane Proteins
Proteins
Escherichia coli
Bacteria

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Genetics

引用此文

Imai, K., Hayat, S., Sakiyama, N., Fujita, N., Tomii, K., Elofsson, A., & Paul, B. H. I. (2013). Localization prediction and structure-based in silico analysis of bacterial proteins: With emphasis on outer membrane proteins. 於 H. Mamitsuka, M. Kanehisa, & C. DeLisi (編輯), Data Mining for Systems Biology: Methods and Protocols (頁 115-140). (Methods in Molecular Biology; 卷 939). https://doi.org/10.1007/978-1-62703-107-3-10
Imai, Kenichiro ; Hayat, Sikander ; Sakiyama, Noriyuki ; Fujita, Naoya ; Tomii, Kentaro ; Elofsson, Arne ; Paul, Brice Horton Ii. / Localization prediction and structure-based in silico analysis of bacterial proteins : With emphasis on outer membrane proteins. Data Mining for Systems Biology: Methods and Protocols. 編輯 / Hiroshi Mamitsuka ; Minoru Kanehisa ; Charles DeLisi. 2013. 頁 115-140 (Methods in Molecular Biology).
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Imai, K, Hayat, S, Sakiyama, N, Fujita, N, Tomii, K, Elofsson, A & Paul, BHI 2013, Localization prediction and structure-based in silico analysis of bacterial proteins: With emphasis on outer membrane proteins. 於 H Mamitsuka, M Kanehisa & C DeLisi (編輯), Data Mining for Systems Biology: Methods and Protocols. Methods in Molecular Biology, 卷 939, 頁 115-140. https://doi.org/10.1007/978-1-62703-107-3-10

Localization prediction and structure-based in silico analysis of bacterial proteins : With emphasis on outer membrane proteins. / Imai, Kenichiro; Hayat, Sikander; Sakiyama, Noriyuki; Fujita, Naoya; Tomii, Kentaro; Elofsson, Arne; Paul, Brice Horton Ii.

Data Mining for Systems Biology: Methods and Protocols. 編輯 / Hiroshi Mamitsuka; Minoru Kanehisa; Charles DeLisi. 2013. p. 115-140 (Methods in Molecular Biology; 卷 939).

研究成果: Chapter

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AU - Imai, Kenichiro

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AU - Fujita, Naoya

AU - Tomii, Kentaro

AU - Elofsson, Arne

AU - Paul, Brice Horton Ii

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Imai K, Hayat S, Sakiyama N, Fujita N, Tomii K, Elofsson A 等. Localization prediction and structure-based in silico analysis of bacterial proteins: With emphasis on outer membrane proteins. 於 Mamitsuka H, Kanehisa M, DeLisi C, 編輯, Data Mining for Systems Biology: Methods and Protocols. 2013. p. 115-140. (Methods in Molecular Biology). https://doi.org/10.1007/978-1-62703-107-3-10