Spectral classification of archaeal and bacterial genomes

Su Long Nyeo, I. Ching Yang, Chi Hao Wu

研究成果: Article同行評審

12 引文 斯高帕斯(Scopus)

摘要

The power spectra of the nucleotides in the coding and noncoding sequences of the complete genomes of twenty-two archaea and bacteria are obtained. According to the intensities at the periodicity of 3 bp in the spectra, it is observed that the genomic sequences may be classified into three types. Moreover, the spectra generally have a small but broad peak in the 10-11 bp periodicities. For the archaea, the peak is seen to locate preferably at about 10 bp periodicity, while for the bacteria, it tends to locate at about 11 bp. These features suggest that the DNA sequences of archaea generally have a tighter double helical structure than those of bacteria in order to cope with harsh environmental conditions. Besides, among the archaea, A. Pernixi K1 is found to have the largest periodicity of about 11 bp, but has a comparatively high CG content in its genome and hence a high denaturation temperature.

原文English
頁(從 - 到)233-241
頁數9
期刊Journal of Biological Systems
10
發行號3
DOIs
出版狀態Published - 2002 9月

All Science Journal Classification (ASJC) codes

  • 生態學
  • 農業與生物科學(雜項)
  • 應用數學

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